Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4228 547 6e-151 seq4466 87.8 2e-12 >seq4228 Length=62806 Score = 547 bits (606), Expect = 6e-151 Identities = 1198/1778 (67%), Gaps = 30/1778 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| || |||| ||| | ||| || | |||||| | | || |||||||| ||| Sbjct 20094 TCAACAGTAAATTGTATGGCATTCACAGCAGGTTTTGTGCGAAGGTAGTACATTCCTGTT 20035 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | |||| | ||||| | || ||||| ||| | || ||| |||| | || | | Sbjct 20034 TTCAAACCCATTTTCCATGCATAGAAATGAATAGATGACAATTTACCGTAGTTTGGTTCA 19975 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || || | | || || |||||||| ||||| |||||||||||||| |||||| Sbjct 19974 GCAACATGGATATTAAAGGACTGGCTTTGATCGATAAATGCACCTCTGTCGGCAGCCATT 19915 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | || || |||| ||| || ||||| || |||||||| | | | |||| | | Sbjct 19914 TGTATTGTAGTTTTTACAGAAATTTCCCAGACAGTTTTATACAAGTCTCTTATTTCTTTA 19855 Query 37030 GG--TAAATCTAAATG--TTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTC 37085 || || || | |||| ||||||||| ||||||| | || ||| || || || Sbjct 19854 GGAATAGAT-TCAATGCTTTGAATAGATCCATTATTGTGGATTATAAGATTTTTCATATC 19796 Query 37086 ATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143 || ||| |||| || ||| ||| || || | ||| |||| || || || Sbjct 19795 -TTCGTCC-CATAAATCAGCTTCAGTTAAATCATGTAACAAGTGATGATTCACCACTTGG 19738 Query 37144 AAATCTCCAGATAATACTCTTCTT--GTATATATATTGCTAGTATATGGTTCAATGGACT 37201 || || || || || || | |||| |||||| | ||| | ||| | ||||||| || | Sbjct 19737 AACTCACCCGACAAGACACGTCTTTGGTATATGT-TTGAT-GTAAAAGGTTCAAATGATT 19680 Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 ||||||| | ||||| || | ||| || ||||| ||||| ||||||| | || || Sbjct 19679 CATTATTTCCCAATATCTGTGCTGTGGAAGCAGTTGGCATAGGTGCTAGCAATAGTGAAT 19620 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 |||| | |||||| | ||| ||| ||||||| || ||| ||||| |||||||||| Sbjct 19619 TTCTAAGACCATGTTTTGCAATCTTCTCTTTTAGTGAATCCCAGTCCCACAAATCTGTTG 19560 Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 || |||| |||||| ||||| || | ||||||| || || || | | ||| | Sbjct 19559 GGGTCTTGTTCCACATGTCATACTGCAATATACCTTGGCTTGCAGGGCTGCCTTCATAAG 19500 Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441 ||||||| ||| | | | |||| ||| || |||| || ||||| |||| || | Sbjct 19499 TCTCATATACTCCATGCTTCTCGGCTAATTCACAGCTAGCCTCCAGTGCACCATAGTAGA 19440 Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501 ||||||| || |||||| ||||||| || | || ||||||| || ||| || || Sbjct 19439 TTGTTTCAAATATTTGTTGATTTAATTTTATAGCAGCTTCGCTTTCATATGGTATGCGCA 19380 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 ||| | ||| ||||||| || || ||||| || || || |||||||| || || ||| Sbjct 19379 TTAAAACAAAAGCATCAGCTAATCCTTGAACTCCAATTCCAATGGGTCTGTGCCTCATAT 19320 Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT 37621 | ||| | | ||| |||||| ||| | || | ||| || ||||| || ||||| | Sbjct 19319 TTGATTTTTTTGCCTCTGGCACTGGGTAAAAGTTCACATCAATAATTTTGTTCAGATTCT 19260 Query 37622 TAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTT---ATTATTAA 37678 | || |||| || | | | |||| ||| || | || || || ||| | Sbjct 19259 CAGTTATAGTTTTAGTGACTTCTTTCAATTTGATAAAATTGTATGTTTTATCATCATTTA 19200 Query 37679 CAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA 37738 |||| || | || | ||| || ||| ||| || ||||||||||||||| | | || Sbjct 19199 CAAACATATTTAATGCAATTGAAGCTAAATTGCAGACAGCAACTTCATCTGCTGAAGTAT 19140 Query 37739 ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGG 37798 ||| || ||| || || || || || || || |||| || || | ||| | || || Sbjct 19139 ATTCTACAATTTCAGTGCAAAGGTTGCTGCATTTAATGGTGCCTAGATTCTTCTGGTTAC 19080 Query 37799 ATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCT 37858 |||| | || || ||||||||||| || || || || |||||| ||| | ||| || | Sbjct 19079 TTTTTCTGTTGCATGAATCTTTATAAAGCATGTATGGTGTTCCTGTTTCAACTTGTGCTT 19020 Query 37859 CGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA-AtttttttCTTTGT- 37916 | || |||| |||||| ||| | || | | | | |||| | ||| | Sbjct 19019 CAATTATAGCTTTCCACAAA--ACCTGAGCTCGCACTTGTTTTACAAAGCGACCTTCCTG 18962 Query 37917 TTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACA 37976 ||| |||| ||| ||| | ||| || | ||||| |||| |||| || || || Sbjct 18961 TTCATATTTCTCATACAATGCTTCAAATTCTTCTCCCCAACAATCGGATAAACCAGGGCA 18902 Query 37977 TTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATC 38036 || |||||||||| | ||| |||| || |||| || | || |||||||||||| Sbjct 18901 ATCATGAGGACACATTATACTCCAATCTTGATTACTTTCAACTCTTTTCATAAATAAATC 18842 Query 38037 AGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTT 38096 |||| |||||| ||| ||| | || | | | |||||| ||||| |||||| Sbjct 18841 TGGTATCCATAAGGCATAAAACAGTTCCCTAGCACGTACTTCTTCTTTCCCAGTATTCTT 18782 Query 38097 TCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGC 38156 | | || ||||| || ||||| ||||| ||||||||||| | ||| || | | ||| Sbjct 18781 TTTCAAATCCAGAAATTCAAATATGTCAGCATGCCATGGTTCCAAATATATGGCAAATGC 18722 Query 38157 TCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAA 38216 || |||||||||| |||||| |||| | || | ||||||| || || | |||||| Sbjct 18721 GCCAGGTCTTTTATTACCTCCTTGATCGACGTAACGCGCTGTGTTGTTGTAAACTCTTAA 18662 Query 38217 CATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCG 38276 ||| || || | |||||| || || ||| |||| | |||||||||||| || | || Sbjct 18661 CATCGGCACAAGACCATTCGACACACCATTTGTACCAGCTATATAAGTACCTTTGGATC- 18603 Query 38277 TATATTACTTATCGACAAT-----CCTATTCCACCTGCATGTTTTGATATTAAAGCGCAT 38331 || ||| | || || || || |||||||| ||| || |||| || ||| Sbjct 18602 --TAATAC--AGTGAACATGGAGGCCAATCCCACCTGCTGATTTAGAAATTAGTGCACAT 18547 Query 38332 TGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAA 38391 ||||||| |||||| | || ||||| ||||| ||||| || || | || | || ||| Sbjct 18546 TGTTTTAGAGTATCATAAATTCCTTCAATACTATCATCTTTCATGGCTATAAGGAAGCAA 18487 Query 38392 CTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAAC 38451 ||||| |||||| ||| || | || || | || || ||||||| | || Sbjct 18486 GAAGACAGTTGAGGACGTGGGGTCGCTGCTGAGAAAAGAGTTGGGCTTGCATGTGTAAAA 18427 Query 38452 CATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATA 38511 ||||||| || | |||| ||||| | || | | || ||||| | || ||||| Sbjct 18426 TATTTTTCAGATAGTAAATTGTATGTGTTAATAGCTCCGTCAATATCTTCACCATGAATG 18367 Query 38512 CCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || | || |||||||| ||||| || || || ||||| Sbjct 18366 CCAATGGAAACCCTCATGAGCATGTGCTGCGGCCTTTC 18329 >seq4466 Length=93423 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 11638 ATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCAT 11697 |||| ||| |||||| | || ||| || || ||||| || || ||||||||||| Sbjct 6036 ATCAAAATACAAACCT-CATCCCTAGAAATCAGCTCATTGCTGAAAGTCAATCCGGGCAT 6094 Query 11698 CAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTC 11757 ||| || || || || ||||| || |||| ||||| ||||| || || || || || Sbjct 6095 CAAGCCACGCTTCTTCATCCAGAAGATAGAGGCAAAACTGCCAGAGAAAAAGATGCCTTC 6154 Query 11758 CACAGCTGCAAATGCTACTACTCTTTCTCC--ATATACCT-TGTTGCTAGATATCCATTT 11814 || || |||||||| | | | |||| | || || || ||||| | ||||| | Sbjct 6155 AACGGCAGCAAATGCGATGATGCGTTCTGCAAATGTAGCTGACTTGCTTGCGATCCACTG 6214 Query 11815 TCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868 |||||| ||||| ||||| ||||| || || ||||| ||||| || || Sbjct 6215 CAGGGCCCAGTCAGCCTTCTTCTTTACACAGGGCAGGGTTTCAATAGCATTGAA 6268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468016573579760