Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4228 515 5e-141 seq5451 84.2 3e-11 >seq4228 Length=62806 Score = 515 bits (570), Expect = 5e-141 Identities = 1180/1757 (67%), Gaps = 42/1757 (2%) Strand=Plus/Minus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || ||||| || || || ||||||||||| ||||| | ||| | ||||| | || ||| Sbjct 20067 GCAGGTTTTGTGCGAAGGTAGTACATTCCTGTTTTCAAACCCATTTTCCATGCATAGAAA 20008 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 || ||| | | ||| || | || || || | ||||||||| | || || ||| Sbjct 20007 TGAATAGATGACAATTTACCGTAGTTTGGTTCAGCAACATGGATATTAAAGGACTGGCTT 19948 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 |||||||| || || || ||||| |||||||||| ||| | || ||| | ||||||| Sbjct 19947 TGATCGATAAATGCACCTCTGTCGGCAGCCATTTGTATTGTAGTTTTTACAGAAATTTCC 19888 Query 65040 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTGTATTCT--GAATGGA 65095 || | ||||||||| || || |||| | |||| |||| | || || || |||| || Sbjct 19887 CAGACAGTTTTATACAAGTCTCTTATT-TCTTTAGGAATAGATTCAATGCTTTGAATAGA 19829 Query 65096 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 65155 |||| || || || ||| || || || || | |||||| | || ||||| Sbjct 19828 TCCATTATTGTGGATTATAAGATTTTTCATATCTTCGTCCCATAAATCAGCTTCAGTTAA 19769 Query 65156 AAC-TCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 65214 | | | ||| || || |||| || ||||| || || || ||||| || | | || Sbjct 19768 ATCATGTAACAAG-TGATGATTCACCACTTGGAACTCACCCGACAAGACACGTCTTTGGT 19710 Query 65215 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 65274 | || || ||| | ||||| | || |||||||||||||| || || || || || | Sbjct 19709 ATATGTTTGATGTAAAAGGTTCAAATGATTCATTATTTCCCAATATCTGTGCTGTGGAAG 19650 Query 65275 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATC 65332 |||| ||||||||||| | ||||| |||||||||||| ||||| || || || || Sbjct 19649 CAGTTGGCATAGGTGCTAGCAATAGTGAATTTCTAAGACC--ATGTTTTGCAATCTTCTC 19592 Query 65333 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 65392 |||||| | ||||| | ||| | ||| | || || | Sbjct 19591 TTTTAGTGAATCCCAGTCCCACAAATCTGTTGGGGTCTTGTTCCACATGTCATACTGCAA 19532 Query 65393 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 65452 ||||| | || || ||| |||| || || ||| ||| | |||||| |||| Sbjct 19531 TATACCTTGGCTTGCAGGGCTGCCTTCATAAGTCTCATATACTCCATGCTTCTCGGCTAA 19472 Query 65453 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 65512 |||||| || ||||| | |||||| || || || ||||| || || | | ||||| || Sbjct 19471 TTCACAGCTAGCCTCCAGTGCACCATAGTAGATTGTTTCAAATATTTGTTGATTTA-ATT 19413 Query 65513 TTGT----GCTTCCAGGCTATCAAATGG-ATAAT--TTAAGAGAATAAACGCGTCTGCTA 65565 || | ||||| ||| ||| |||| || |||| || ||| || || |||| Sbjct 19412 TTATAGCAGCTTC---GCTTTCATATGGTATGCGCATTAA---AACAAAAGCATCAGCTA 19359 Query 65566 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAA 65625 |||||||||| ||||| || || ||||| || ||| |||| || ||| || ||||| | Sbjct 19358 ATCCTTGAACTCCAATTCCAATGGGTCTGTGCCTCATATTTGATTTTTTTGCCTCTGGCA 19299 Query 65626 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACC-ACA 65684 || ||| | || | ||| |||||||| || ||||| || | || ||| | || Sbjct 19298 CTGGGTAAAAGTTCACATCAATAATTTTGTTCAGATT-CTCAGTTATAGTTTTAGTGACT 19240 Query 65685 TCCTTCAGTTTGAGAAAATCAAATCGCT---CATCTATTACAAACATGTTCAATGCAACA 65741 || |||| ||||| ||||| || | |||| |||||||||| || ||||||| Sbjct 19239 TCTTTCAATTTGATAAAATTGTATGTTTTATCATCATTTACAAACATATTTAATGCAATT 19180 Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 65801 || || | ||| || || || || |||| || | ||||| || || ||||||||| Sbjct 19179 GAAGCTAAATTGCAGACAGCAACTTCATCTGCTGAAGTATATTCTACAATTTCAGTGCAA 19120 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 || || || || || ||||| |||| ||| | || ||||| ||| |||| || | ||| Sbjct 19119 AGGTTGCTGCATTTAATGGTGCCTAGATTCTTCTGGTTACTTTTTCTGTTGCATGAATCT 19060 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 65921 |||||||| ||| |||| || || ||||||| || | ||| || || |||||||| | Sbjct 19059 TTATAAAGCATGTATGGTGTTCCTGTTTCAACTTGTGCTTCAATTATAGCTTTCCACAAA 19000 Query 65922 ACTCGA----GCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAA 65977 || || || || || || | | | ||| ||| ||| |||||| Sbjct 18999 ACCTGAGCTCGCACTTGTTTTACA----AAGCGACCTTCCTGTTCATATTTCTCATACAA 18944 Query 65978 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 66037 | ||| || || ||||||||| || | || ||||| || |||| |||||||| | Sbjct 18943 TGCTTCAAATTCTTCTCCCCAACAATCGGATAAACCAGGGCAATCATGAGGACACATTAT 18884 Query 66038 CGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 66096 ||| ||| | | | ||| |||| ||||||||| | ||| || ||||| | || Sbjct 18883 ACTCCAATCTTGATTA-CTTTCAACTCTTTTCATAAATAAATCTGGTATCCATAAGGCAT 18825 Query 66097 TAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 66156 ||| | || || | | ||| || || || ||||||||||| | ||| || || Sbjct 18824 AAAACAGTTCCCTAGCACGTACTTCTTCTTTCCCAGTATTCTTTTTCAAATCCAGAAATT 18765 Query 66157 CCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 66216 | | || ||| |||||| |||||||| |||||||| | | ||||| | ||| || | Sbjct 18764 CAAATATGTCAGCATGCCATGGTTCCAAATATATGGCAAATGCGCCAGGTCTTTTATTAC 18705 Query 66217 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 66276 |||| ||||| | ||| | || ||||| || |||||||| ||||| || | || ||||| Sbjct 18704 CTCCTTGATCGACGTAACGCGCTGTGTTGTTGTAAACTCTTAACATCGGCACAAGACCAT 18645 Query 66277 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATA 66336 | || |||||| || || | ||||| | || | | | |||| || | Sbjct 18644 TCGACACACCATTTGTACCAGCTATATAAGTACCTTTGGATCTAATACAGTGAACATGGA 18585 Query 66337 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 66396 | || || || ||||| |||||| |||| ||| ||| |||||| |||||||| || | Sbjct 18584 GGCCAATCCCACCTGCTGATTTAGAAATTAGTGCACATTGTTTTAGAGTATCATAAATTC 18525 Query 66397 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 66456 | || ||||||||||| ||||| | || || || ||||| ||| |||| | Sbjct 18524 CTTCAATACTATCATCTTTCATGGCTATAAGGAAGCAAGAAGACAGTTGAGGACGTGGGG 18465 Query 66457 TTCCCGCATTAAATAAG-GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 | | || | | | ||| || || || || ||||| |||||||||| |||| |||| Sbjct 18464 TCGCTGC-TGAGAAAAGAGTTGGGCTTGCATGTGTAAAATATTTTTCAGATAGTAAATTG 18406 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || | ||||||| ||| ||||| |||||| || | | || | ||| | | Sbjct 18405 TATGTGTTAATAGCTCCGTCAATATCTTCACCATGAATGCCAATGGAAACCCTCATGAGC 18346 Query 66576 ATGTGCTGAGGTCTTTC 66592 |||||||| || ||||| Sbjct 18345 ATGTGCTGCGGCCTTTC 18329 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 66810 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCC 66869 ||||| ||||||||||||| ||| || | ||| | ||| || || | || |||||||| Sbjct 16052 TTTTTGGTTTCTTTGTGTAAATTAGAAATGGCCAATCTTGCAGCAAGTATTGCATAATCT 15993 Query 66870 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 66929 ||||| | ||||| || |||||| ||||||| || | | || | ||| || ||| Sbjct 15992 GGATGATCAGTAGTCATGGTTGCTGCTGTTTCGGCAGCTAAGTTATCAAGTTCCACAGTT 15933 Query 66930 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTAT 66970 || ||||| ||||| || ||| || |||| || ||| Sbjct 15932 GTCACTCCCGAGTATATCCCACTGATGACTTTCAGAGTTAT 15892 >seq5451 Length=979821 Score = 84.2 bits (92), Expect = 3e-11 Identities = 244/375 (65%), Gaps = 3/375 (1%) Strand=Plus/Plus Query 158437 TTTCTGTTATGACTCCAATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGG 158496 ||||| |||||||||| | || ||||| || ||| | || | || || | | || Sbjct 213638 TTTCTCTTATGACTCCTGTGCTACCAATGTTGGCTGAAGCTTGCAAATCAGTGGAAATGG 213697 Query 158497 CATTTAAAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTAC 158556 || | ||||| | ||| |||||||| | ||| | ||||| || || || ||||| | Sbjct 213698 CAATGAAAAAGTGTCCCAATGGAATGTTCTCAGAAATAAAATATGACGGTGAAAGAGTGC 213757 Query 158557 AAGTTCATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCT 158616 |||| || ||||| || ||||| | || ||| | |||||||| | Sbjct 213758 AAGTGCACAAAAAAGGGAATGAGTTCAAATATTTCTCAAGAGCGTTAAAACCAGTTATGG 213817 Query 158617 CTCATAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTA 158676 | || ||||| | || |||| || || ||||| |||| || ||||| |||| | Sbjct 213818 CACACAAAGTCAGTCATTTCAAGGATTATTTACCGCAAGCTTTCCCAAAAGGTACGGACA 213877 Query 158677 TCGTATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTACCGC---TCCCGTTTG 158733 | || ||||| ||||| || | | ||||| | ||| || || | || || | Sbjct 213878 TGATACTGGATGCTGAAGTTTTGATGGTAGATGTGAATACTGGGAAGCCATTGCCATTCG 213937 Query 158734 GAAGTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGT 158793 | | |||||| |||| || | ||||| ||| | | | ||||| ||| | | | Sbjct 213938 GTACATTAGGTGTACATAAGCGGTCAGAATTCAAAGATGCACAAGTGTGTCTGTACATAT 213997 Query 158794 TTGACTGTTTGTACT 158808 ||||||||||||||| Sbjct 213998 TTGACTGTTTGTACT 214012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657458855282360