Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4167 104 2e-17 >seq4167 Length=57674 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | ||| || ||||| | || |||||||| | |||||| || ||| Sbjct 14363 CCACCACGCAGACGTAAAACTAAATGCAACGTAGATTCCTTTTGAATATTGTAGTCTGAC 14422 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| || |||| ||||| ||||||||||| || ||||||| ||| || || | || Sbjct 14423 AATGTGCGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGG 14482 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || || |||| || | | | |||||| ||| || || Sbjct 14483 ATTCCCTCTTTGTCTTGAATTTTGGCTTTCACATTTTCGATTGTGTCAGAAGCTTCAACT 14542 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || ||||| || || || |||||||| Sbjct 14543 TCCAAAGTAATGGTCTTTCCAGTCAGAGTCTTGACGAAGATTTGCAT 14589 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||| ||||| || || ||| | || ||||||||||||||||| ||| Sbjct 13943 TCCTTCTGAATATTGTAGTCGGATAACGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAA 14002 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| | ||| || || | || | || ||||| || ||| | || || | Sbjct 14003 ATCAACCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTT 14062 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | |||||| ||||||||| |||| || || || || |||||||| || || || Sbjct 14063 TCGATTGTGTCTGAAGCCTCGACCTCTAGTGTAATGGTCTTGCCGGTTAGGGTCTTGACG 14122 Query 43099 AAAATTTGCAT 43109 || |||||||| Sbjct 14123 AAGATTTGCAT 14133 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42895 CTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCG 42954 ||||| || ||||| | || |||||||| | |||||||||||| | ||| ||| || Sbjct 13691 CTTAATACTAAATGAAGTGTAGATTCCTTTTGGATATTGTAATCGGAGAGTGTGCGTCCG 13750 Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || |||| || |||||||| || ||||| | ||| || || | || | || ||||| Sbjct 13751 TCTTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCTTTA 13810 Query 43015 TCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATA 43074 || ||| |||| || | | | |||||| ||| || || |||| || || Sbjct 13811 TCTTGGATTTTGGCTTTCACATTCTCGATTGTGTCTGAAGCTTCAACTTCTAATGTGATC 13870 Query 43075 GTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || ||||| || || || ||||||||||| Sbjct 13871 GTTTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 13905 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | ||| || || |||| || ||||| || | |||||| ||||| Sbjct 17555 CCACCACGCAGACGTAATACTAAGTGGAGCGTAGATTCCTTCTGGATATTGTAGTCGGAT 17614 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| || | || || | ||||||||||| || ||||||||||| || || | || Sbjct 17615 AATGTGCGCCCATCTTCAAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGG 17674 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | ||||| | ||| ||||||| || ||| || Sbjct 17675 ATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATTGTGTCGGAAGGCTCAACC 17734 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || | ||||| || ||||| ||||| Sbjct 17735 TCCAATGTGATGGTTTTGCCTGTCAATGTTTTAACGAAAATCTGCAT 17781 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | || || |||| |||| || || || | || ||||| || Sbjct 14135 CCACCACGCAGACGCAGTACTAAGTGGAGAGTGGATTCTTTCTGTATGTTATAATCTGAG 14194 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || ||||| |||||||||||||||||||||| ||| || || | || Sbjct 14195 AGCGTACGACCATCTTCCAACTGTTTGCCGGCAAAAATCAATCTCTGCTGGTCTGGAGGG 14254 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || ||| |||| || | | | |||||| || ||||| Sbjct 14255 ATCCCCTCTTTGTCTTGGATTTTGGCTTTCACATTTTCGATTGTGTCCGAGGCTTCGACT 14314 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || || || || |||||||| || || |||||||| Sbjct 14315 TCTAGTGTAATGGTCTTGCCCGTCAGAGTTTTAACGAAGATTTGCAT 14361 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | || || || || | || || || || | |||||| ||||| Sbjct 16871 CCACCACGCAGACGCAATACTAAGTGAAGCGTTGATTCTTTCTGGATATTGTAGTCGGAT 16930 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||| ||||||||||| ||||| | ||||||||| || | || Sbjct 16931 AACGTACGCCCATCTTCCAACTGTTTGCCGGCGAAAATAAGTCGCTGTTGGTCAGGAGGA 16990 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| ||||||| | ||| ||| || || || || Sbjct 16991 ATTCCTTCCTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTATCAGAGGCTTCAACT 17050 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||||| || || || || ||||| || || || |||||||| Sbjct 17051 TCTAGTGTTATGGTCTTGCCAGTCAGAGTCTTGACGAATATTTGCAT 17097 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | || ||| ||||| | ||| ||||| || | |||||||||||| Sbjct 17327 CCACCACGCAGACGTAGCACTAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGAA 17386 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| || || ||||| || |||| ||| || || || | || Sbjct 17387 AGCGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCTGGTGGA 17446 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| |||| || | | | |||||| | ||| || Sbjct 17447 ATGCCTTCCTTGTCTTGGATTTTAGCTTTAACATTCTCGATTGTGTCTGATGGCTCAACT 17506 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| ||||| ||||| || || | ||||| ||||| ||||||||| Sbjct 17507 TCTAAAGTTATTGTTTTACCAGTCAATGTTTTGACAAAGATTTGCATT 17554 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | || ||||| |||| ||| || || || | || ||||| || Sbjct 16415 CCACCACGCAGACGTAGAACCAAGTGGAGTGTGGATTCTTTCTGGATGTTATAATCTGAG 16474 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || |||| |||||||| || || ||||||| ||| || || | || Sbjct 16475 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGG 16534 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || || |||| || | | | |||||| ||||||||| Sbjct 16535 ATTCCCTCTTTGTCTTGAATTTTGGCTTTCACATTTTCGATTGTGTCAGAAGCCTCGACT 16594 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || ||||| |||||||||||||| Sbjct 16595 TCCAAAGTAATGGTCTTGCCAGTCAGGGTTTTGACAAAAATTTGCAT 16641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380966256241182