Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4167 122 6e-23 seq1544 109 4e-19 seq4140 84.2 2e-11 >seq4167 Length=57674 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| ||||| ||||||||||| || || || ||||| || ||||||||| Sbjct 13679 CCACCTCTCAACCTTAATACTAAATGAAGTGTAGATTCCTTTTGGATATTGTAATCGGAG 13738 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | || ||||| ||| | ||||| | || ||||| ||| Sbjct 13739 AGTGTGCGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGG 13798 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || |||||| || ||| | || || || || | ||| || Sbjct 13799 ATCCCCTCTTTATCTTGGATTTTGGCTTTCACATTCTCGATTGTGTCTGAAGCTTCAACT 13858 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || |||||||| || || || || || ||||||||||| Sbjct 13859 TCTAATGTGATCGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 13905 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || | |||||||||||| | || || || ||||| || ||||| | || Sbjct 14363 CCACCACGCAGACGTAAAACTAAATGCAACGTAGATTCCTTTTGAATATTGTAGT--CTG 14420 Query 15197 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | ||||||| || |||||||| ||| | ||||| | || ||||| | Sbjct 14421 ACAATGTGCGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGAG 14480 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | ||||| |||||||| ||||||| || ||| |||| || || || | ||| | Sbjct 14481 GGATTCCCTCTTTGTCTTGAATTTTGGCTTTCACATTTTCGATTGTGTCAGAAGCTTCAA 14540 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || |||||||| || || |||||||| || || || ||||||||| Sbjct 14541 CTTCCAAAGTAATGGTCTTTCCAGTCAGAGTCTTGACGAAGATTTGCATA 14590 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || | || ||| || || || ||||| ||||| || ||||| ||||| | Sbjct 16415 CCACCACGCAGACGTAGAACCAAGTGGAGTGTGGATTCTTTCTGGATGTTATAATC--TG 16472 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | || | ||||| | |||||||||||| | ||||| | || ||||| | Sbjct 16473 AGAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCGAAGATCAATCTCTGCTGGTCTGGGG 16532 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | ||||| |||||||| ||||||| || ||| |||| || || || | || | Sbjct 16533 GGATTCCCTCTTTGTCTTGAATTTTGGCTTTCACATTTTCGATTGTGTCAGAAGCCTCGA 16592 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || |||||||| || || ||||| ||||| ||||||||||||||| Sbjct 16593 CTTCCAAAGTAATGGTCTTGCCAGTCAGGGTTTTGACAAAAATTTGCATA 16642 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || ||||| ||||| || || ||||| || || ||||| ||| || | | | | ||| Sbjct 16886 AATACTAAGTGAAGCGTTGATTCTTTCTGGATATTGTAGTCGGATAACGTACGCCCATCT 16945 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT-C 15270 || || |||||||| ||| | || | || |||||||| ||||||||||| |||| | Sbjct 16946 TCCAACTGTTTGCCGGCGAAAATAAGTCGCTGTTGGTCAGGAGGAATTCCTTCCTTGTCC 17005 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 | ||||||| || ||| |||| || ||||| ||| || |||| || ||||| Sbjct 17006 TGGATTTTTGCT-TTGACATTTTCAATTGTATCAGAGGCTTCAACTTCTAGTGTTATGGT 17064 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| || || || ||||||||| Sbjct 17065 CTTGCCAGTCAGAGTCTTGACGAATATTTGCATA 17098 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||| || || ||||| ||||| |||||||| ||||| || | | | ||||| Sbjct 14153 ACTAAGTGGAGAGTGGATTCTTTCTGTATGTTATAATCTGAGAGCGTACGACCATCTTCC 14212 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || |||||||| || | ||||| | || ||||| || || || |||||||| Sbjct 14213 AACTGTTTGCCGGCAAAAATCAATCTCTGCTGGTCTGGAGGGATCCCCTCTTTGTCTTGG 14272 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| |||| || || || ||| || |||| |||||||| || Sbjct 14273 ATTTTGGCTTTCACATTTTCGATTGTGTCCGAGGCTTCGACTTCTAGTGTAATGGTCTTG 14332 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||||||||| || || ||||||||| Sbjct 14333 CCCGTCAGAGTTTTAACGAAGATTTGCATA 14362 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| | | | |||||||| | || || || || || || ||||| ||| Sbjct 13905 TGCCACCTCTAAGACGAAGGACTAAATGCAACGTAGATTCCTTCTGAATATTGTAGTCGG 13964 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | ||||| ||||||||||| ||| | ||||| | || ||||| | Sbjct 13965 ATAACGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGG 14024 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | ||||| |||||||| |||||| ||| ||| |||| || || || | || | Sbjct 14025 GGATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCGATTGTGTCTGAAGCCTCGA 14084 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | |||| |||||||| || || || || || || || || ||||||||| Sbjct 14085 CCTCTAGTGTAATGGTCTTGCCGGTTAGGGTCTTGACGAAGATTTGCATA 14134 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || | || ||||||||||| || || || || || || ||||||||| Sbjct 17327 CCACCACGCAGACGTAGCACTAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGAA 17386 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || || || ||| | |||| ||||| ||||| |||| Sbjct 17387 AGCGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCTGGTGGA 17446 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| ||||| ||| || ||| | || || || || || || Sbjct 17447 ATGCCTTCCTTGTCTTGGATTTTAGCT-TTAACATTCTCGATTGTGTCTGATGGCTCAAC 17505 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || |||||||| |||| ||||| ||||| |||||||| Sbjct 17506 TTCTAAAGTTATTGTTTTACCAGTCAATGTTTTGACAAAGATTTGCAT 17553 >seq1544 Length=14195 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||||||||| || || || |||||||| ||| || | | | ||| Sbjct 4643 AAGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 4702 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| ||||| ||| | |||| ||| || ||||| || || ||||| ||||| Sbjct 4703 TCCAATTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 4762 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| | || || ||||| | || || |||| || || ||| Sbjct 4763 TGGATCTTGGCCTTGACATTCTCAATAGTATCAGAAGGCTCCACTTCTAGTGTTATTGTT 4822 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| |||||||| ||||| |||||| Sbjct 4823 TTGCCTGTCAGTGTTTTTACGAAAATCTGCATA 4855 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||||||||| || ||||| || ||||| ||| || | | | ||| Sbjct 3275 AAGACCAAGTGAAGGGTGGATTCCTTTTGGATATTGTAGTCGGAAAGGGTGCGTCCATCT 3334 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || || ||||| ||| | || | ||| || ||||| || || ||||| ||||| Sbjct 3335 TCCAACTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 3394 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||||||| |||| || || || | ||| || || | ||| ||||| Sbjct 3395 TGGATCTTGGCCTTTACATTTTCAATCGTGTCCGAAGGTTCAACCTCGAGGGTGATGGTC 3454 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| |||| ||||| |||||||| |||||| Sbjct 3455 TTACCAGTCAAGGTTTTGACAAAAATCTGCATA 3487 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||||||||| || ||||| || ||||| ||| || | | | ||| Sbjct 4187 AAGACCAAGTGAAGGGTGGATTCCTTTTGGATATTGTAGTCGGAAAGCGTACGACCATCT 4246 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || || ||||| ||| | |||| ||| || |||||| || || ||||| ||||| Sbjct 4247 TCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGCCTTCCTTGTCT 4306 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| ||| ||| | || || || || | ||| || || | ||| ||||| Sbjct 4307 TGAATCTTGGCCTTGACATTCTCAATAGTGTCAGAAGGTTCAACCTCGAGGGTGATGGTC 4366 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| |||| ||||| ||||| || |||||| Sbjct 4367 TTACCAGTCAAGGTTTTGACAAAGATCTGCATA 4399 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||||||||| || ||||| || || || || || | | | ||| Sbjct 4415 AAGACCAAGTGAAGGGTGGATTCCTTTTGGATATTATAGTCAGAGAGGGTGCGTCCATCT 4474 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || ||||| ||||| ||| | |||| ||| || ||||| || || ||||| ||||| Sbjct 4475 TCCAATTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCT 4534 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| ||| ||| | || || || ||| | ||| || || | ||| ||||| Sbjct 4535 TGAATCTTGGCCTTGACATTCTCAATAGTGTCGGAAGGTTCGACCTCAAGGGTGATGGTC 4594 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| |||| || || || ||||| |||||| Sbjct 4595 TTACCAGTCAAGGTCTTGACGAAAATCTGCATA 4627 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || ||||| |||||||| ||| || | | |||| || Sbjct 2822 ACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCA 2881 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | |||||||| || ||||| || || ||||||||||| Sbjct 2882 AGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGGGGGATGCCTTCTTTGTCCTGG 2941 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||||||| |||| || ||||| | || || || | |||||| || || Sbjct 2942 ATCTTAGCCTTTACATTTTCAATTGTATCAGAAGGCTCGACCTCGAGGGTAATAGTCTTG 3001 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || ||||| || |||||| Sbjct 3002 CCAGTCAAGGTCTTGACAAAGATCTGCATA 3031 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || || || || |||||||| || || | | |||||||| Sbjct 5102 ACCAAGTGGAGTGTAGATTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGGCCGTCTTCT 5161 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || |||||| | |||| || || || || |||||| ||||||||||| | Sbjct 5162 AGCTGCTTTCCAGCGAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGA 5221 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| |||||| |||| || || || || || || | || || ||||| Sbjct 5222 ATTTTAGCT-TTTACATTTTCAATAGTGTCTGAGGGCTCAACTTCAAGAGTGATAGTTTT 5280 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| |||| ||||| || ||||| ||||| Sbjct 5281 ACCCGTCAAGGTTTTCACGAAAATCTGCAT 5310 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| || || || ||||||||||| || | | | ||||| | ||| Sbjct 4879 ATGGAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGGGTACGACCATCTTCAAGTTG 4938 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||||||| | |||| || || ||||| || || ||||| || || ||| || Sbjct 4939 TTTGCCAGCGAAGATCAGTCGCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGAATCTT 4998 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| ||| | || || || || | ||| || || | ||| ||||| || || || Sbjct 4999 GGCCTTGACATTCTCAATAGTGTCAGAAGGTTCAACCTCGAGGGTGATGGTCTTGCCAGT 5058 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || || ||||| |||||| Sbjct 5059 CAAGGTCTTGACGAAAATCTGCATA 5083 >seq4140 Length=56097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | || | || || ||||||||||| || || || |||||||| || Sbjct 50446 CCTCCTCTAAGCCTAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAA 50387 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | || || || ||||| |||||| | || | || || || || ||| Sbjct 50386 AGAGTGCGGCCATCCTCCAACTGTTTACCAGCGAAGATAAGTCGCTGCTGATCTGGTGGG 50327 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| || ||||| || |||||| || ||| | || || || || | || || Sbjct 50326 ATTCCCTCCTTGTCCTGGATCTTTGCT-TTGACATTCTCAATAGTGTCTGAAGCCTCCAC 50268 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||||||||| || || |||||||| || || ||||| Sbjct 50267 CTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 50220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361796152374039