Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq84480 230 2e-55 seq2172 196 4e-45 seq4134 136 3e-27 seq4167 98.7 8e-16 seq4140 87.8 1e-12 >seq84480 Length=6514 Score = 230 bits (254), Expect = 2e-55 Identities = 689/1048 (66%), Gaps = 23/1048 (2%) Strand=Plus/Minus Query 100256 AAAACGTAAGCCGCTTTAGCGACCGAATCAAATTTGTA-----AATGTACTTGTTCAATT 100310 || ||||||| |||| ||| ||| ||| | | ||| | | | |||| ||||| Sbjct 6465 AACACGTAAGGTGCTTGAGCTACCTTGTCATAATGGTACTCCCACTTTCCTTGAGCAATT 6406 Query 100311 -CGTTTTCAATTTGGCGATAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCCG 100369 || | |||| | | || || || || ||||| | ||| || || | || || || Sbjct 6405 TCGGTGGCAATCTCTCTGTAGTCCACCACTCCGTCCTGCCATGTTCCCTTGACTGGGCCA 6346 Query 100370 GCAGCTGTGCCTGTGAAATAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACCGCGG 100429 | |||| ||| ||||| |||| || | | ||||| ||| || |||||||| || Sbjct 6345 GTAGCTACGCCAGTGAATGGGTTGCCATCCTTGTAGCCGTTCACTCCAGTCCAACCTCGT 6286 Query 100430 CCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAGCAAT 100489 |||||||| ||||| || || | ||| || ||| || || || | ||| ||| Sbjct 6285 CCGTACATAGCAACACCGACGACAATCTTCTTGGGGCTGACTCCTTGAGCCAAGAGGAAT 6226 Query 100490 TTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGAGAGTG 100549 || || || || || |||| ||| || ||||||| || || | ||| Sbjct 6225 TTAACACCGAAGTCAGTTGTGTATGTCTCCTTGCGGTTCCATGCAGGGGCATGTAGACCA 6166 Query 100550 GTTTGGTAGCCCAAATCG-GT-GTTTGACCAGGCGCCTTTAAAATCGTAGCTCATAAGAA 100607 | |||| ||| || || || ||| |||||||| || || || ||||||||||| | || Sbjct 6165 GCCTGGTGGCC--AAGCGTGTCGTTGGACCAGGCACCCTTGAAGTCGTAGCTCATCAAAA 6108 Query 100608 ATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGTCATAGC 100667 | || | ||| | || || || | | ||| | || || ||| ||||| | | Sbjct 6107 AGATGTGATCCATGTACTGCTGAGCGGCCTTGTAGTCAACAACCTGAATCTTGTCCCAAC 6048 Query 100668 CGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGT-TTGCAGTTGT-AGCTGGTC 100725 | || ||||| || |||| ||||| | || || || ||| | || |||| || Sbjct 6047 CAGAGCTGATGGCTGAGGTCAGTTCGTATTTCTTTCCAGTCTTG--GCTGACAGCTCGTT 5990 Query 100726 CAGCATCGCGCGCAATTCCTTCAGTAAAATGTT-GTACGTGTCGGCGTCG-CGCTCCCCG 100783 || |||| | | ||||||||||| | | || ||| | | |||| || || Sbjct 5989 CAACATCTCTCTCAATTCCTTCA-TCAGCTGCACGTAGATTTGACCGTCTTCGGGACCA- 5932 Query 100784 TTGCCAAGAGTCGGG-TTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCC 100842 || || |||||| ||||| || || || || || |||||||| |||||||| || || Sbjct 5931 ---CCTAG-GTCGGGGTTGGCTCCCTTACCACCAGGGAACTCCCAATCAATGTCAACACC 5876 Query 100843 GTCAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTT 100902 || || || ||||| || | || ||||| || ||| | || || || | || Sbjct 5875 ATCGAAGAATTTCCAGGTCTCGAGGAAGTCCTTCACTGAGGCGACGAAGCGGCTTCTCTT 5816 Query 100903 TTCCGCATCGTGCATGAAATAGAACGGGTCGGACAACGTCCAGCCGCCGATGGACGGCAG 100962 |||| ||| | ||| | || || |||| || ||||| || || | || || || Sbjct 5815 TTCCTTGTCGGTGAAGAAGAAAAAGGGATCGGCCAGGGTCCATCCACCAACAGAAGGAAG 5756 Query 100963 AATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTGTA 101022 || || |||| || | ||| | || | ||| | ||| ||||| ||||||||||| Sbjct 5755 GATCTTCAGGTCTGGTCTCGCCTGTTTCAACATCATCAACTGGCCGAAGTTGCCCTTGTA 5696 Query 101023 CGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTG 101082 ||||||||||||| || ||||| || ||||| || | || ||||| ||||| || Sbjct 5695 AGGCTCGTTCCATGAACCCAAACCCTTCTGTGGTTTCTGAAGAGCAGCCCAAGGATCATG 5636 Query 101083 AATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCC 101142 |||| |||||||| ||| | || |||| || | ||||| |||| |||||||| Sbjct 5635 GATGGACACTTTGAAGTCTTCCCTGCCGCTGCATGATCTTTGCAGAGCTTGGAAACTGCC 5576 Query 101143 GGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTA 101202 ||| ||| | |||||||| ||| || || |||||||| || ||||| ||||| Sbjct 5575 TTCAATCTCTTTCAAACTGTCGTTGATGCCATCTCCACCGCAAATTGGGATGAAACCGTA 5516 Query 101203 CAACAGATGCGAGAGATTGGGCAGCGGCACTTTGTCTACCGGAAAATTGCGGCCGTACAC 101262 | ||||| | |||||||| | ||||| ||| || || || || | ||| || Sbjct 5515 AAGAAGATGAGTTAGATTGGGGATAGGCACACGGTCAACGGGGAACTTCCTCGGGTAGAC 5456 Query 101263 GCCCCACTCTACAAAATACGCAGCGACG 101290 ||||| || || || || ||| | ||| Sbjct 5455 ACCCCATTCGACGAAGTATGCACCAACG 5428 >seq2172 Length=16819 Score = 196 bits (216), Expect = 4e-45 Identities = 626/966 (65%), Gaps = 9/966 (1%) Strand=Plus/Minus Query 100328 TAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCCGGCAGCTGTGCCTGTGAAA 100387 || || || || || || | ||| || || | || || || | |||| ||| ||||| Sbjct 8229 TAGTCCACCACTCCCTCCTGCCACGTTCCCTTAACTGGGCCAGTAGCTACGCCAGTGAAT 8170 Query 100388 TAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCC 100447 |||| || | | ||||| || || ||||| || | || ||||||||||| || Sbjct 8169 GGGTTGCCATCCTTGTAGCCATTTACTCCAGTCCAGCCTCTTCCATACATGGCAACACCA 8110 Query 100448 ACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTGAGCAATTTCACGGCGTGATCCGTG 100507 || | || || | | || || || | ||| |||| || || || || Sbjct 8109 ACGACGATCTTCTTGGAGCTGACTCCTTGAGCCAAGAGAGATTTGACACCGAAGTCAGTT 8050 Query 100508 TTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAAATCG 100567 |||| |||| | ||||||| | || |||| ||| | |||| ||| | | | Sbjct 8049 GTGTATGTCTCGCTGCGGTTCCATGTAGGGGCGTGTAGACCAGAATGGTGGCCAAGAGCA 7990 Query 100568 GTGTTTGACCAGGCGCCTTTAAAATCGTAGCTCATAAGAAATATTTTATCGAGAAGCTTT 100627 |||| ||||||| || || || ||||||||||| | || || | || | || Sbjct 7989 TTGTTGGACCAGGAACCCTTGAAGTCGTAGCTCATCAAGAAGATATGGTCCATGTACTGC 7930 Query 100628 TGCGCAACGTCGTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGATTGCGCTTGTC 100687 || || | | ||| | ||| || ||| ||||| | || | ||||| || ||| Sbjct 7929 TGAGCGGCCTTGTAGTCTACGACCTGAATCTTGTCCCAACCAGCGCTGATGGCTGAGGTC 7870 Query 100688 AACTCGTACGTTTTGCCCGT-TTGCAGTTGT-AGCTGGTCCAGCATCGCGCGCAATTCCT 100745 | ||||| | || || || ||| | || |||| || || ||| | | |||||||| Sbjct 7869 AGTTCGTATTTCTTTCCAGTCTTG--GCTGACAGCTCGTTCAACATTTCTCTCAATTCCT 7812 Query 100746 TCAGTAAAATGTTGTACGTGTCGGCGTCG-CGCTCCCCGTTGCCAAGAGTCGGGTTGGCG 100804 ||| | | ||| ||| |||| || || ||||| | || ||||| Sbjct 7811 TCATCAGCTGGACGTAGATGTGACCGTCTTCGGGACCA----CCAAGGTTGGGATTGGCT 7756 Query 100805 CCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACTTCCACACCTGC 100864 || || || || || |||||||| |||||||| || || || || || ||||| || Sbjct 7755 CCCTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAGAATTTCCAGGTCTCG 7696 Query 100865 AAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTTTTCCGCATCGTGCATGAAATAG 100924 | || ||||| || ||| | || || | | |||||| ||| | ||| || Sbjct 7695 AGGAAGTCCTTCACTGAGGCGACGAAGCGGTTTCTCTTTTCCTTGTCGGTGAAGAAGAAG 7636 Query 100925 AACGGGTCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGAGGTGCGGATTGGCC 100984 || || |||| || ||||| || || | || || || || || |||| || | ||| Sbjct 7635 AAAGGATCGGCCAGGGTCCATCCACCAACTGAAGGAAGGATCTTCAGGTCTGGTCTCGCC 7576 Query 100985 AGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGTTCCATGCGGACACG 101044 | || | ||| | ||| ||||| ||||||||||| ||||||||||| || | || Sbjct 7575 TGTTTTAACATCATCAACTGGCCGAAGTTGCCCTTGTAAGGCTCGTTCCAGGCAGTCAAA 7516 Query 101045 CCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGACTTTGAAATCTGAA 101104 |||||||| ||||| || | || ||||| ||||| || || | |||||||| ||| Sbjct 7515 CCCTTTTGTGGTTTCTGAAGAGCAGCCCAAGGATCATGGATTGACACTTTGAAGTCTTCC 7456 Query 101105 CGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTTTTGAGGGCGTCG 101164 | ||| |||| || ||||| || |||||||| ||| ||| | | |||| Sbjct 7455 CTGCCCCTGCATGATTTTTGCAGAATTTGGAAACTGCCTTCAATCTGTTTCAAGCTGTCG 7396 Query 101165 TTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGATGCGAGAGATTGGGC 101224 |||| || || || |||||||| || ||||| ||||| | ||||| | ||||| || Sbjct 7395 TTGATACCATCTCCACCGCAAATTGGGATGAAACCGTAAAGAAGATGAGTTAGATTAGGG 7336 Query 101225 AGCGGCACTTTGTCTACCGGAAAATTGCGGCCGTACACGCCCCACTCTACAAAATACGCA 101284 | ||||| ||| || ||||| || | ||| || ||||| || || || || ||| Sbjct 7335 ATGGGCACGCGGTCAACTGGAAACTTCCTCAGGTAGACACCCCATTCGACGAAGTATGCA 7276 Query 101285 GCGACG 101290 | ||| Sbjct 7275 CCAACG 7270 >seq4134 Length=55171 Score = 136 bits (150), Expect = 3e-27 Identities = 197/278 (71%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 24858 CACGATTCGGTCACGACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTATGCG 24917 |||| || |||| ||||| || || || ||||| ||||| || || | ||||| ||| Sbjct 48640 CACGCCTCCGTCATCACCTTCTGGACGTACTCGCGACCCTTCACCAGCTGCACGTAGGCG 48581 Query 24918 CAGCGCCCGAACCAAAGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTGTCC 24977 ||||| |||||||| ||||||| || | ||||||| ||||||| | |||||||| | | Sbjct 48580 CAGCGGTCGAACCAACGCGCGTGCTGCTCCCACGGCACGTCATCGTTCTCCCAGTCTTTC 48521 Query 24978 AAACCGCCGTCGCAGTAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAGCCA 25037 || || || ||||||||||| ||||| ||||| | | ||||| || |||||||| Sbjct 48520 AAGCCTCCATCGCAGTAAAAGCATTTAGTCTTGTCACCTTGACCGGTATAGAAGAAGCCT 48461 Query 25038 GCTTCTGCAAGTTTTTCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAATGTGCGC 25097 || || || || | || || || |||| | | ||||| ||| || ||||| Sbjct 48460 GCCTCGGCGAGCTCCTCAGGTTTCTGTTTCATGCATCTAGGCCAGTCTTGGAAACTGCGC 48401 Query 25098 AAACGCGCAGCTTCTATCGCATATTTGGGGTGCGCGGG 25135 | || || ||||| | | || ||||||| |||| Sbjct 48400 AGCCGAGCGGCTTCGGACACGTAGCGGGGGTGCACGGG 48363 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 25236 AACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCCTCCCAG 25295 || |||||||||||||||||| ||||| || || || |||||||| | |||| Sbjct 48253 AATGGGCATTGCGGCGCCCATCGCTGATGGTCCTTGGCAGGATCGTCGCCTTCTACCCAT 48194 Query 25296 CGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAGTAGTAG 25355 |||||| ||||| || || || |||||||| |||||||| || || || | ||| || Sbjct 48193 TTCATAATTTCCACCTTACAGAATGCGCAGCGTACTTCGTCTCCACGGCCGAGGTAATAA 48134 Query 25356 AACCCATT 25363 || ||||| Sbjct 48133 AATCCATT 48126 >seq4167 Length=57674 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| | ||| || | ||||||||||| ||||||||||||||||| || | | Sbjct 14363 CCACCACGCAGACGTAAAACTAAATGCAACGTAGATTCCTTTTGAATATTGTAGTCTGAC 14422 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| |||| |||| |||||| || || | || | ||||||||| || || Sbjct 14423 AATGTGCGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGG 14482 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| |||||| ||| || | ||| || || || || | Sbjct 14483 ATTCCCTCTTTGTCTTGAATTTTGGCTTTCACATTTTCGATTGTGTCAGAAGCTTCAACT 14542 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||||| || || || | ||| ||||| || |||||||| Sbjct 14543 TCCAAAGTAATGGTCTTTCCAGTCAGAGTCTTGACGAAGATTTGCAT 14589 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| ||||||||| || | || | ||||| |||||||| ||||||||||| | Sbjct 13677 TTCCACCTCTCAACCTTAATACTAAATGAAGTGTAGATTCCTTTTGGATATTGTAATCGG 13736 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| |||| |||||||| || || || | || | |||||||| || | Sbjct 13737 AGAGTGTGCGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGTG 13796 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||||| || ||||| ||| || | ||| || || || || Sbjct 13797 GGATCCCCTCTTTATCTTGGATTTTGGCTTTCACATTCTCGATTGTGTCTGAAGCTTCAA 13856 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || || |||||||| |||| || ||||| ||||||||||| Sbjct 13857 CTTCTAATGTGATCGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 13905 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| ||||| |||||||||||||| | | || | | || |||||||| ||||| Sbjct 17357 GTAGATTCCTTCTGAATATTGTAATCGGAAAGCGTGCGGCCATCTTCCAGCTGCTTACCG 17416 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || |||| ||||| || || | ||| || ||||| ||||| ||| Sbjct 17417 GCGAAGATCAGTCGTTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTA 17476 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| || || ||||| ||| | || || |||||||| || || ||| Sbjct 17477 ACATTCTCGATTGTGTCTGATGGCTCAACTTCTAAAGTTATTGTTTTACCAGTCAATGTT 17536 Query 19025 TTGACAAAAATTTGCATT 19042 |||||||| ||||||||| Sbjct 17537 TTGACAAAGATTTGCATT 17554 >seq4140 Length=56097 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || ||||||| | ||| | ||||| ||| | || || ||||| || || ||||| || Sbjct 50449 TTACCTCCTCTAAGCCTAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCA 50390 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | | || | | ||||||| ||||||||| || | ||||||| ||||||||| Sbjct 50389 GAAAGAGTGCGGCCATCCTCCAACTGTTTACCAGCGAAGATAAGTCGCTGCTGATCTGGT 50330 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | ||||| ||||| || || ||| || | | | ||| || || |||| Sbjct 50329 GGGATTCCCTCCTTGTCCTGGATCTTTGCTTTGACATTCTCAATAGTGTCTGAAGCCTCC 50270 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 |||| ||| ||||||||||| || | ||||| || || || |||||| Sbjct 50269 ACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 50219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414134339903926