Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq84480 208 6e-49 seq2172 190 2e-43 seq4134 109 5e-19 seq1544 100 2e-16 seq4167 91.5 1e-13 >seq84480 Length=6514 Score = 208 bits (230), Expect = 6e-49 Identities = 701/1078 (65%), Gaps = 19/1078 (2%) Strand=Plus/Minus Query 100912 ATCAAACGATATCAAGTCGCCATTGTCTTTGTTAAAAACGTAAGATGCTTTAGCGGCCGT 100971 |||| ||| || | ||| || | || || | || ||||||| ||||| ||| || | Sbjct 6499 ATCATACGTAATAAGGTCTCCTGTCTCCTTTCTGAACACGTAAGGTGCTTGAGCTACCTT 6440 Query 100972 GTCAAATTTGTATT-----TGTACTTGTTTAATT-CGTTTTTAATTTGGCGATAATCGAC 101025 |||| | | ||| | | | |||| |||| || | ||| | | || || || Sbjct 6439 GTCATAATGGTACTCCCACTTTCCTTGAGCAATTTCGGTGGCAATCTCTCTGTAGTCCAC 6380 Query 101026 AACGCCGTCTTCCCAAGTACCGGTCACGGGCCCGGCAGCTGTGCCTGTGAAATAGTTGTC 101085 || ||||| | ||| || || | || || || | |||| ||| ||||| |||| | Sbjct 6379 CACTCCGTCCTGCCATGTTCCCTTGACTGGGCCAGTAGCTACGCCAGTGAATGGGTTGCC 6320 Query 101086 ACCGTCATAGCCTGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAAT 101145 | | | ||||| ||| || |||||||| || |||||||| ||||| || || | ||| Sbjct 6319 ATCCTTGTAGCCGTTCACTCCAGTCCAACCTCGTCCGTACATAGCAACACCGACGACAAT 6260 Query 101146 TTTGCGCGGGTCT-ACGCCCTGGTTCGTGAGCGATTTAACAGCGTAATCCGTGTTGTACA 101204 || | ||| || || || || | ||| |||||||| || | || || |||| Sbjct 6259 CTT-CTTGGGGCTGACTCCTTGAGCCAAGAGGAATTTAACACCGAAGTCAGTTGTGTATG 6201 Query 101205 GCTCGTTTGGGTTCCAACTCGGCGCGTAGAGTGTAGTTTGATAGCCCAGATCGATGTTTG 101264 ||| || ||||||| || || | || || || | ||| || | ||| | Sbjct 6200 TCTCCTTGCGGTTCCATGCAGGGGCATGTAGACCAGCCTGGTGGCCAAGCGTGTCGTTGG 6141 Query 101265 ACCACGCGCCTTTGAAATCGTAGCTCATGAGAAATATTTTATCGAGGAACTTTTGCGCAA 101324 |||| || || ||||| ||||||||||| | ||| || | ||| | | ||| || || Sbjct 6140 ACCAGGCACCCTTGAAGTCGTAGCTCATCAAAAAGATGTGATCCATGTACTGCTGAGCGG 6081 Query 101325 GATCGTATTTTACTACAGCAATTTTGTCGTGACCCGAACTAATTGCACTTGTTAATTCGT 101384 | ||| | || || ||| ||||| ||| || || || || || | ||||| Sbjct 6080 CCTTGTAGTCAACAACCTGAATCTTGTCCCAACCAGAGCTGATGGCTGAGGTCAGTTCGT 6021 Query 101385 ATGTTTTGCCCGT-TTGCAGTTG-CAACTCGTCCAGCATTGCGCGCAATTCTTTCAGTAA 101442 || | || || || ||| | || || ||||| || ||| | | |||||| |||| | | Sbjct 6020 ATTTCTTTCCAGTCTTG--GCTGACAGCTCGTTCAACATCTCTCTCAATTCCTTCA-TCA 5964 Query 101443 AATGTT-GTACGTGTCAGCGTCGCGTTCTTTGTTGCCGAGTGTTGGGTTGGCGCCTTTAC 101501 || ||| | | | |||| ||| || || |||||||| || |||| Sbjct 5963 GCTGCACGTAGATTTGACCGTC---TTCGGGACCACCTAGGTCGGGGTTGGCTCCCTTAC 5907 Query 101502 CACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAATTTCCAAACCTGCAAAAATT 101561 |||| || ||||||||||| ||||| || || || || |||||||| || | || | Sbjct 5906 CACCAGGGAACTCCCAATCAATGTCAACACCATCGAAGAATTTCCAGGTCTCGAGGAAGT 5847 Query 101562 CTTTGACAGAATCCACAAACACACGCCGTTTTATCGCGTCGTGCATATAATAGAACGGG- 101620 | || || || | || || | | ||| | |||| | | || | || ||| Sbjct 5846 CCTTCACTGAGGCGACGAAGCGGCTTCTCTTTTCCTTGTCGGTGA-AGAAGAAAAAGGGA 5788 Query 101621 TCGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTAAGGTGTGGATTGGCCAATTTG 101680 |||| || ||||| || || | || || | || || |||| ||| | ||| ||| Sbjct 5787 TCGGCCAGGGTCCATCCACCAACAGAAGGAAGGATCTTCAGGTCTGGTCTCGCCTGTTTC 5728 Query 101681 GCCGCCATTAGCTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGATACACCTTTC 101740 | ||| | ||| || |||||||| ||||| ||||||||||| | | | ||| ||| Sbjct 5727 AACATCATCAACTGGCCGAAGTTGCCCTTGTAAGGCTCGTTCCATGAACCCAAACCCTTC 5668 Query 101741 TGCGGTTTTTGTATTGCGGCCCAAGGATCGTGGATAGCAACTTTAAAATCTGAACGGCCC 101800 || ||||| || | || ||||||||||| ||||| | ||||| || ||| | ||| Sbjct 5667 TGTGGTTTCTGAAGAGCAGCCCAAGGATCATGGATGGACACTTTGAAGTCTTCCCTGCCG 5608 Query 101801 TGGCAAGAACGTTGCAACGCTTCAAAACTACCGGGTATGGTTTTGAGGGCGTCGTTAAGG 101860 ||| || | ||||| |||| ||||| || || ||| | |||||| | | Sbjct 5607 CTGCATGATCTTTGCAGAGCTTGGAAACTGCCTTCAATCTCTTTCAAACTGTCGTTGATG 5548 Query 101861 CCATCGCCGCCACAAATGGGTATGAACCCGTACAACAAATGTGAGAGGTTGGGCAGCGGC 101920 ||||| || || ||||| || ||||| ||||| | | ||| | || ||||| | ||| Sbjct 5547 CCATCTCCACCGCAAATTGGGATGAAACCGTAAAGAAGATGAGTTAGATTGGGGATAGGC 5488 Query 101921 ACTTTGTCCACCGGAAAGTTGCGACCATACACGCCCCATTCTACAAAATACGCAGCAA 101978 || ||| || || || || | || || |||||||| || || || ||| ||| Sbjct 5487 ACACGGTCAACGGGGAACTTCCTCGGGTAGACACCCCATTCGACGAAGTATGCACCAA 5430 >seq2172 Length=16819 Score = 190 bits (210), Expect = 2e-43 Identities = 629/966 (65%), Gaps = 13/966 (1%) Strand=Plus/Minus Query 101018 TAATCGACAACGCCGTCTTCCCAAGTACCGGTCACGGGCCCGGCAGCTGTGCCTGTGAAA 101077 || || || || || || | ||| || || | || || || | |||| ||| ||||| Sbjct 8229 TAGTCCACCACTCCCTCCTGCCACGTTCCCTTAACTGGGCCAGTAGCTACGCCAGTGAAT 8170 Query 101078 TAGTTGTCACCGTCATAGCCTGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCC 101137 |||| || | | ||||| || || ||||| || | || ||||||||||| || Sbjct 8169 GGGTTGCCATCCTTGTAGCCATTTACTCCAGTCCAGCCTCTTCCATACATGGCAACACCA 8110 Query 101138 ACAATAATTTTGCGCGGGTCT-ACGCCCTGGTTCGTGAGCGATTTAACAGCGTAATCCGT 101196 || | || || | || || || || || | ||| ||||| ||| || | || || Sbjct 8109 ACGACGATCTT-CTTGGAGCTGACTCCTTGAGCCAAGAGAGATTTGACACCGAAGTCAGT 8051 Query 101197 GTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGTAGAGTGTAGTTTGATAGCCCAGATC 101256 |||| |||| | ||||||| | || |||| || || || | ||| ||| | Sbjct 8050 TGTGTATGTCTCGCTGCGGTTCCATGTAGGGGCGTGTAGACCAGAATGGTGGCCAAGAGC 7991 Query 101257 GATGTTTGACCACGCGCCTTTGAAATCGTAGCTCATGAGAAATATTTTATCGAGGAACTT 101316 |||| ||||| | || ||||| ||||||||||| | || || | || | | ||| Sbjct 7990 ATTGTTGGACCAGGAACCCTTGAAGTCGTAGCTCATCAAGAAGATATGGTCCATGTACTG 7931 Query 101317 TTGCGCAAGATCGTATTTTACTACAGCAATTTTGTCGTGACCCGAACTAATTGCACTTGT 101376 || || | ||| | ||| || ||| ||||| ||| | || || || || Sbjct 7930 CTGAGCGGCCTTGTAGTCTACGACCTGAATCTTGTCCCAACCAGCGCTGATGGCTGAGGT 7871 Query 101377 TAATTCGTATGTTTTGCCCGT-TTGCAGTTG-CAACTCGTCCAGCATTGCGCGCAATTCT 101434 | ||||||| | || || || ||| | || || ||||| || |||| | | |||||| Sbjct 7870 CAGTTCGTATTTCTTTCCAGTCTTG--GCTGACAGCTCGTTCAACATTTCTCTCAATTCC 7813 Query 101435 TTCAGTAAAATGTTGTACGTGTCAGCGTCGCGTTCTTTGTTGCCGAGTGTTGGG-TTGGC 101493 |||| | | ||| ||| | |||| ||| || || |||||| ||||| Sbjct 7812 TTCATCAGCTGGACGTAGATGTGACCGTC---TTCGGGACCACCAAG-GTTGGGATTGGC 7757 Query 101494 GCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAATTTCCAAACCTG 101553 || |||||||| || ||||||||||| ||||| || || || || |||||||| || Sbjct 7756 TCCCTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAGAATTTCCAGGTCTC 7697 Query 101554 CAAAAATTCTTTGACAGAATCCACAAACACACGCCGTTTTATCGCGTCG-TGCATATAAT 101612 | || || || || || | || || | ||| | |||| || | | | Sbjct 7696 GAGGAAGTCCTTCACTGAGGCGACGAAGCGGTTTCTCTTTTCCTTGTCGGTGAAGAAGA- 7638 Query 101613 AGAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTAAGGTGTGGATTGG 101672 |||| || |||| || ||||| || || | || || | || || |||| ||| | | Sbjct 7637 AGAAAGGATCGGCCAGGGTCCATCCACCAACTGAAGGAAGGATCTTCAGGTCTGGTCTCG 7578 Query 101673 CCAATTTGGCCGCCATTAGCTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGATA 101732 || ||| | ||| | ||| || |||||||| ||||| ||||||||||| |||| | Sbjct 7577 CCTGTTTTAACATCATCAACTGGCCGAAGTTGCCCTTGTAAGGCTCGTTCCAGGCAGTCA 7518 Query 101733 CACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCGTGGATAGCAACTTTAAAATCTG 101792 ||| || || ||||| || | || ||||||||||| ||||| | ||||| || ||| Sbjct 7517 AACCCTTTTGTGGTTTCTGAAGAGCAGCCCAAGGATCATGGATTGACACTTTGAAGTCTT 7458 Query 101793 AACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTACCGGGTATGGTTTTGAGGGCGT 101852 | |||| ||| || ||||| || ||||| || || ||| | | || Sbjct 7457 CCCTGCCCCTGCATGATTTTTGCAGAATTTGGAAACTGCCTTCAATCTGTTTCAAGCTGT 7398 Query 101853 CGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCGTACAACAAATGTGAGAGGTTGG 101912 |||| | ||||| || || ||||| || ||||| ||||| | | ||| | || || | Sbjct 7397 CGTTGATACCATCTCCACCGCAAATTGGGATGAAACCGTAAAGAAGATGAGTTAGATTAG 7338 Query 101913 GCAGCGGCACTTTGTCCACCGGAAAGTTGCGACCATACACGCCCCATTCTACAAAATACG 101972 | | ||||| ||| || ||||| || | || || |||||||| || || || | Sbjct 7337 GGATGGGCACGCGGTCAACTGGAAACTTCCTCAGGTAGACACCCCATTCGACGAAGTATG 7278 Query 101973 CAGCAA 101978 || ||| Sbjct 7277 CACCAA 7272 >seq4134 Length=55171 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 23538 TGCACGTAGTCGTAGCCCTTTACGAGCCGCACGTATGTGCAGCGATCAAACCAACGTGCG 23597 || ||||| ||| ||||| || ||| ||||||| | |||||| || |||||||| ||| Sbjct 48619 TGGACGTACTCGCGACCCTTCACCAGCTGCACGTAGGCGCAGCGGTCGAACCAACGCGCG 48560 Query 23598 TGTTCTTCCCACGGCTCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGAAAA 23657 || | ||||||||| |||| | | ||||||||||| | ||| || ||||| | ||| Sbjct 48559 TGCTGCTCCCACGGCACGTCATCGTTCTCCCAGTCTTTCAAGCCTCCATCGCAGTAAAAG 48500 Query 23658 CATTTGACCCTGTCACCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCTGGC 23717 ||||| | ||||||| | ||||| || | || || || || || | | ||| || Sbjct 48499 CATTTAGTCTTGTCACCTTGACCGGTATAGAAGAAGCCTGCCTCGGCGAGCTCCTCAGGT 48440 Query 23718 TTTTGTTT 23725 || ||||| Sbjct 48439 TTCTGTTT 48432 >seq1544 Length=14195 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| ||||| || || || ||||||||||| |||||||| || | || ||| Sbjct 3046 CAAGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGTCCATC 3105 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||| |||||||| || ||||||| | ||| || || ||| | |||||| ||||| Sbjct 3106 TTCCAACTGTTTGCCGGCGAAAATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTC 3165 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||| || || || | ||| | ||| || || ||||| ||| ||||| Sbjct 3166 TTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAGGGCTCAACTTCCAGGGTGATGGT 3225 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||| ||||| ||||||||||| || ||||| Sbjct 3226 TTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 3258 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| ||||| || || || ||||| ||||| || ||||| ||| | || | ||| Sbjct 4186 CAAGACCAAGTGAAGGGTGGATTCCTTTTGGATATTGTAGTCGGAAAGCGTACGACCATC 4245 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||| || ||||| || | || || | ||| || ||| ||| | |||||| ||||| Sbjct 4246 TTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGCCTTCCTTGTC 4305 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||| || || || | ||| || || |||||| || | ||| ||||| Sbjct 4306 TTGAATCTTGGCCTTGACATTCTCAATAGTGTCAGAAGGTTCAACCTCGAGGGTGATGGT 4365 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || ||||| ||||||||||| || ||||| Sbjct 4366 CTTACCAGTCAAGGTTTTGACAAAGATCTGCAT 4398 >seq4167 Length=57674 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTT 20057 ||||| || ||||| |||||||| || ||||| ||||| | ||| | || ||||| Sbjct 16433 ACCAAGTGGAGTGTGGATTCTTTCTGGATGTTATAATCTG--AGAGTGTGCGACCATCTT 16490 Query 20058 CCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 ||| |||||||| || | || | ||||| || || ||| | || |||||||| Sbjct 16491 CCAGCTGTTTGCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGGATTCCCTCTTTGTCTT 16550 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 |||||| |||||| | | | | || || || ||||| |||||||| | Sbjct 16551 GAATTTTGGCTTTCACATTTTCGATTGTGTCAGAAGCCTCGACTTCCAAAGTAATGGTCT 16610 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| |||| |||||||||||||||||||| Sbjct 16611 TGCCAGTCAGGGTTTTGACAAAAATTTGCAT 16641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419143436578899