Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2172 158 1e-33 seq84480 149 5e-31 seq4140 104 2e-17 seq1544 84.2 2e-11 >seq2172 Length=16819 Score = 158 bits (174), Expect = 1e-33 Identities = 416/625 (67%), Gaps = 25/625 (4%) Strand=Plus/Plus Query 30232 TACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGACTTAGTTCCCGTCCCC 30291 ||||| || || |||||||| ||| || | | ||||| ||| || ||| |||| Sbjct 7280 TACTTCGTCGAATGGGGTGTCTACCTGAGGAAGTTTCCAGTTGACCGCGTGCCCATCCCT 7339 Query 30292 AACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGAT 30351 || || || |||||| | || || || | || | ||||||||||||||||| ||||| Sbjct 7340 AATCTAACTCATCTTCTTTACGGTTTCATCCCAATTTGCGGTGGAGATGGTATCAACGAC 7399 Query 30352 AGCTTAAAGCA-AGTGCCGGGTTCGTTTGAGGCTT-TACAAAAATCTTGCGCGGGTCGAG 30409 ||||| || || | || || |||| || | |||||||| ||| ||| | | Sbjct 7400 AGCTTGAAACAGATTGAAGGCA--GTTTCCAAATTCTGCAAAAATCATGCAGGGGCAGGG 7457 Query 30410 AGGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAG 30469 | || || |||||| | || || ||| ||||| |||||||| ||||||||||| || Sbjct 7458 AAGACTTCAAAGTGTCAATCCATGATCCTTGGGCTGCTCTTCAGAAACCACAAAAGGGTT 7517 Query 30470 TGGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAAAGAC 30529 || || ||| |||| || || || || || || ||||| ||||| | |||||| | Sbjct 7518 TGACTGCCTGGAACGAGCCTTACAAGGGCAACTTCGGCCAGTTGATGATG-TTAAAACAG 7576 Query 30530 AC-AATCCCGACCTTACGATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCTTTC 30588 | | || ||||| | ||| | || || |||| || ||||| || ||| |||||| Sbjct 7577 GCGAGACCAGACCTGAAGATCCTTCCTTCAGTTGGTGGATGGACCCTGGCCGATCCTTTC 7636 Query 30589 TTTAAATTGAGTTCTGCC---GAAAATCGCGCCGTTTTCGTTGAGTCCGCACGAGAGTAT 30645 || || | | | | ||||| | | ||||| | || || || | Sbjct 7637 TTCTTCTTCA---CCGACAAGGAAAAGAGAAACCGCTTCGTCG---CCTCAGTGAAGGAC 7690 Query 30646 TTGCGC---ACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGGT 30702 || | | || |||||||| || || || | ||||| || |||||||| || || ||| Sbjct 7691 TTCCTCGAGACCTGGAAATTCTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGGTGGT 7750 Query 30703 AAAGGTGCTAATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTAACA--TATGTGCAGT 30760 || || || |||||| | | || | ||| ||| | | || ||| || || ||| Sbjct 7751 AAGGGAGCCAATCCCAACCTTGGTGGTCCCGAAGACG-----GTCACATCTACGTCCAGC 7805 Query 30761 TATTGAAAGAGCTCAGAGAAATGCTAAACGATCTTTCTAAAGAAACAGGGAAAAAATACC 30820 | |||| || | ||||||||| | ||||| || || | || || || |||||| Sbjct 7806 TGATGAAGGAATTGAGAGAAATGTTGAACGAGCTGTCAGCCAAGACTGGAAAGAAATACG 7865 Query 30821 AGCTCACCTCGGCGATTAGCGCGGG 30845 | || ||||| || || ||||| || Sbjct 7866 AACTGACCTCAGCCATCAGCGCTGG 7890 >seq84480 Length=6514 Score = 149 bits (164), Expect = 5e-31 Identities = 473/721 (66%), Gaps = 23/721 (3%) Strand=Plus/Plus Query 30232 TACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGACTTAGTTCCCGTCCCC 30291 ||||| || || |||||||| ||| || | | || | ||| || || ||||| Sbjct 5438 TACTTCGTCGAATGGGGTGTCTACCCGAGGAAGTTCCCCGTTGACCGTGTGCCTATCCCC 5497 Query 30292 AACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGAT 30351 || || || |||||| | || || || | || | |||||||||||||| || ||||| Sbjct 5498 AATCTAACTCATCTTCTTTACGGTTTCATCCCAATTTGCGGTGGAGATGGCATCAACGAC 5557 Query 30352 AGCTT-AAAGCAAGTGCCGGGTTCGTTT-GAGGCTTTACAAAAATCTTGCGCGGGTCGAG 30409 || || |||| | || || |||| | ||| | |||| ||| ||| || | | Sbjct 5558 AGTTTGAAAGAGATTGAAGG--CAGTTTCCAAGCTCTGCAAAGATCATGCAGCGGCAGGG 5615 Query 30410 AGGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAG 30469 | || || |||||| | || || ||| ||||| |||||||| |||||||| || || Sbjct 5616 AAGACTTCAAAGTGTCCATCCATGATCCTTGGGCTGCTCTTCAGAAACCACAGAAGGGTT 5675 Query 30470 TGGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAA-AGA 30528 |||| | ||| |||| || || || || || || ||||| ||||| | | ||| || Sbjct 5676 TGGGTTCATGGAACGAGCCTTACAAGGGCAACTTCGGCCAGTTGATGATGTTGAAACAGG 5735 Query 30529 CACAATCCCGACCTTACGATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCTTTC 30588 | | || ||||| | ||| | || ||| |||| || ||||| || ||| || || Sbjct 5736 C-GAGACCAGACCTGAAGATCCTTCCTTCTGTTGGTGGATGGACCCTGGCCGATCCCTTT 5794 Query 30589 TTTAAATTGAGTTCTGCC---GAAAATCG-CGCCGTTTTCGTTGAGTCCGCACGAGAGTA 30644 || || | | | | ||||| | |||| ||||| | || || || | Sbjct 5795 TTCTTCTTCA---CCGACAAGGAAAAGAGAAGCCG-CTTCGTCG---CCTCAGTGAAGGA 5847 Query 30645 TTTGCGC---ACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGG 30701 || | | || |||||||| || || || | ||||| || |||||||| || || || Sbjct 5848 CTTCCTCGAGACCTGGAAATTCTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGGTGG 5907 Query 30702 TAAAGGTGCTAATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTAACATATGTGCAGTT 30761 ||| || || || ||||| |||| | ||| ||| || || || || |||||| | Sbjct 5908 TAAGGGAGCCAACCCCGACCTAGGTGGTCCCGAA---GACGGTCAAATCTACGTGCAGCT 5964 Query 30762 ATTGAAAGAGCTCAGAGAAATGCTAAACGATCTTTCTAAAGAAACAGGGAAAAAATACCA 30821 |||| || | ||||| ||| | ||||| || || | || || || |||||| | Sbjct 5965 GATGAAGGAATTGAGAGAGATGTTGAACGAGCTGTCAGCCAAGACTGGAAAGAAATACGA 6024 Query 30822 GCTCACCTCGGCGATTAGCGCGGGGTACGATAAAATCTCTATAGTTAATTATGAAAATGC 30881 || ||||| || || ||| | || | || || || | ||| | || | || Sbjct 6025 ACTGACCTCAGCCATCAGCTCTGGTTGGGACAAGATTCAGGTTGTTGACTACAAGGCCGC 6084 Query 30882 GCAAGAGTATCTTGATCACATTTTTGTTATGACGTACGATTTTAAAGGCGCTTGGTCTAA 30941 || |||| | |||||||| ||| | |||| ||||| || || || || ||||| || Sbjct 6085 TCAGCAGTACATGGATCACATCTTTTTGATGAGCTACGACTTCAAGGGTGCCTGGTCCAA 6144 Query 30942 C 30942 | Sbjct 6145 C 6145 >seq4140 Length=56097 Score = 104 bits (114), Expect = 2e-17 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | | ||| | ||| || ||||| ||| ||||| || |||||||| |||| Sbjct 50447 ACCTCCTCTAAGCCTAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 50388 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || | ||||||| ||| ||||| || | || | ||||||||||| | Sbjct 50387 AAGAGTGCGGC-CATCCTCCAACTGTTTACCAGCGAAGATAAGTCGCTGCTGATCTGGTG 50329 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTT-GATAGACGCTATGGTATCGGTAGACTCC 48676 | | | ||||||||| || || ||||| || | | | || || || | || |||| Sbjct 50328 GGATTCCCTCCTTGTCCTGGATCTT-TGCTTTGACATTCTCAATAGTGTCTGAAGCCTCC 50270 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGT 48731 ||||| || ||||||||||| ||||| ||||| || || |||||||| |||| Sbjct 50269 ACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTGT 50215 >seq1544 Length=14195 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTC 48573 || || || ||||| ||| ||||| || |||||||| || | || || || | || Sbjct 4643 AAGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA-AAGGGTGCGTCCATC 4701 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 |||| ||||| ||| || | || | ||||||||| || || | | ||||||||| Sbjct 4702 TTCCAATTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 4761 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | || || ||||| | | | || ||||| | || |||| || | |||||| || Sbjct 4762 CTGGATCTTGGCCTTGACATTCTCAATAGTATCAGAAGGCTCCACTTCTAGTGTTATTGT 4821 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || || ||||| || ||||||||||| Sbjct 4822 TTTGCCTGTCAGTGTTTTTACGAAAATCTGCAT 4854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420805676700779