Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2441 156 7e-34 seq793 149 1e-31 seq3876 143 4e-30 seq4679 95.1 2e-15 seq4773 91.5 2e-14 >seq2441 Length=18251 Score = 156 bits (172), Expect = 7e-34 Identities = 184/249 (74%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||| ||||| || || |||||||||||||| | || Sbjct 951 CTTCGTGATAACATCCAGGGTATCACGAAGCCCGCCATACGTCGTCTGGCTCGCAGGGGC 892 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || ||| |||| || || |||| || |||| ||| | ||| | || | ||| Sbjct 891 GGCGTGAAACGTATCTCCGGTCTGATCTACGAGGAGACTCGCGGTGTGCTTAAAGTGTTC 832 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||||| || ||| ||||||||||| || | ||||| ||| Sbjct 831 CTAGAGAACGTCATCCGCGATGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTC 772 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| ||||||| ||||||| || |||| || || || |||| | || ||||| || Sbjct 771 ACCGCCATGGACGTCGTCTACGCTCTGAAGCGCCAGGGTCGTACCCTGTACGGTTTCGGC 712 Query 16694 AGTTAATCT 16702 ||||| || Sbjct 711 GGTTAAACT 703 >seq793 Length=11848 Score = 149 bits (164), Expect = 1e-31 Identities = 279/407 (69%), Gaps = 6/407 (1%) Strand=Plus/Minus Query 441 GTGCATAAGGTGGACGAAGTCATTCAAATGAACTTTCTCCTCAAGAATATCGTCA---CG 497 ||||| | ||| ||| | || | | || ||||| |||| |||| || ||||| || Sbjct 4229 GTGCAGGAAGTGTACGTACTCCTCGAGATTAACTTCCTCC--AAGA-TAACGTCATCTCG 4173 Query 498 CAAAATTCCCTTGTGATTTAACTTTAGGTAATTCAGCTTGTATAGATTAGATGATTTTTC 557 || ||| | ||||| || ||||| | ||||||||||| | | ||| | || ||||| Sbjct 4172 CAGCATTTCTTTGTGCTTCAACTTCAAATAATTCAGCTTTTTCACATTCGCCGAATTTTC 4113 Query 558 AATTTCACTGACTAGAAAACCATCTACAGTCTTGAAGATTTTCTCCAACAAATAATAAAT 617 ||||||||||||||||||||| | | | | |||| || ||||| | || ||| || Sbjct 4112 AATTTCACTGACTAGAAAACCGTTGAAATTTCTGAAAATCTTCTCTACCATATACAGAAC 4053 Query 618 TTTCTTTCTCCGTTTTTGGAtttttttCAAAGTCATTACGTAACTTAGTAGTTCTTTTCG 677 || | |||||| | | ||||| |||| | |||| || | || | || |||||||| Sbjct 4052 CTTGTCTCTCCGCGATGGTATTTTCTTCAGAATCATCACATGTCTCATTAAATCTTTTCG 3993 Query 678 TTTCTCGATAGGCTTCAAATCTAGATCATAATTGAACCATGTCAAAATTTCAATCATATA 737 || | ||| | | |||||||| | || || || | | || |||||||||||| Sbjct 3992 CTTGTTGATGGTGTCCAAATCTAACTTGTAGTTCAAATAGATTAAGATTTCAATCATAGC 3933 Query 738 GCGCGCTACGCTATAATACCCTCTTAGCCGTTCCTGCTTGTAGTGTTGAGGATCATTTTT 797 | || |||| |||||| ||| | || || || | | ||| |||||| | ||| Sbjct 3932 ATGTGCGACGCCGTAATACATTCTCAAACGCTCGTGAGCGAAACGTTCAGGATCGTCTTT 3873 Query 798 AAAAATTCCTGAGGACAATTCCACGCAGTACCATAACGCAGTTGGTA 844 || || | ||||| || ||||||||||| | ||||| |||| Sbjct 3872 GAAGATGATCGTGGACATCTCGACGCAGTACCACAGAGCAGTAGGTA 3826 Score = 91.5 bits (100), Expect = 2e-14 Identities = 202/302 (67%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 6019 AATCAAATTACTGTACATCGTCACAAATGGCAAGATTAGCCGGGAAAGTATAGACGAATG 6078 ||| ||||| |||||||| | || |||| |||| | | ||| || | || ||| Sbjct 2655 AATTAAATTGATGTACATCATTACCGATGGTCAGATCAACAGGGGGAGCTTCGAAACATG 2714 Query 6079 TTTGGAATTGAATAAAGAAATAGATTATGAAATGGTTGTTTTCCATGCATTCAATGAAGA 6138 ||| ||| | ||| || | || |||| |||| |||||| ||||| || | | |||||| Sbjct 2715 TTTAGAACTTAATGAAAATATTCATTACGAAAAGGTTGTGTTCCACGCGCTGAGTGAAGA 2774 Query 6139 CCCGGAAAAAATCGACCTTTTAGTAGCTGCACCTTTCTTCAAGAGCCGTTGCATCGTTTA 6198 | | | || ||| | | ||| |||| ||||| ||||||||| || | |||| Sbjct 2775 CTTGAACTGCATTGACTTATCAGTTACTGCGTCTTTCATCAAGAGCCAATGTACTATTTA 2834 Query 6199 TCACAATACCGAACTTTGTAACCGTACTCATATTTCCAAGGAGTTTGATTATGA-CAAGA 6257 | || | |||||| | | || |||| || ||||||||||| || || ||| Sbjct 2835 CCGTAACAACGAACTATTCGATGAAACCGATATCTCTAAGGAGTTTGACTACGATCAACC 2894 Query 6258 TCAGTAGCGACAACTTCGCAGTTGAAATGCAACAACTTATGTCTTATATTAAATTGAAGT 6317 | ||||||||| || |||| || | || | |||||||||||||| |||| Sbjct 2895 T-----TCGACAACTTTGCTACGGAAAAAGAAAATCTGAAGTCTTATATTAAATACAAGT 2949 Query 6318 TC 6319 || Sbjct 2950 TC 2951 >seq3876 Length=40230 Score = 143 bits (158), Expect = 4e-30 Identities = 259/379 (68%), Gaps = 0/379 (0%) Strand=Plus/Plus Query 466 AAATGAACTTTCTCCTCAAGAATATCGTCACGCAAAATTCCCTTGTGATTTAACTTTAGG 525 |||| ||||| |||| | || | ||| |||| ||| | ||||| || ||||| | Sbjct 24651 AAATTAACTTCCTCCAAGATAACGTTGTCTCGCAGCATTTCTTTGTGTTTCAACTTCAAA 24710 Query 526 TAATTCAGCTTGTATAGATTAGATGATTTTTCAATTTCACTGACTAGAAAACCATCTACA 585 ||||||||||| | | ||| | || |||||||||||||||||||||||||| | ||| Sbjct 24711 TAATTCAGCTTTTTCACATTCGCCGAATTTTCAATTTCACTGACTAGAAAACCGTTGACA 24770 Query 586 GTCTTGAAGATTTTCTCCAACAAATAATAAATTTTCTTTCTCCGTTTTTGGAtttttttC 645 | |||| || ||||| | || ||| || || | |||||| | | ||||| ||| Sbjct 24771 TTTCTGAAAATCTTCTCTACCATATACAGAACCTTGTCTCTCCGCGATGGAATTTTCTTC 24830 Query 646 AAAGTCATTACGTAACTTAGTAGTTCTTTTCGTTTCTCGATAGGCTTCAAATCTAGATCA 705 | | |||| || | || | || || ||||| || | ||| | | ||| |||| | Sbjct 24831 AGAATCATCACATGTCTAATTAAATCCTTTCGCTTGTTGATGGTGTCCAAGTCTAACTTG 24890 Query 706 TAATTGAACCATGTCAAAATTTCAATCATATAGCGCGCTACGCTATAATACCCTCTTAGC 765 || || || | | || |||||||||||| | | || |||| |||||| ||| | Sbjct 24891 TAGTTCAAATAGATTAAGATTTCAATCATAACGTGTGCGACGCCGTAATACATTCTCAAA 24950 Query 766 CGTTCCTGCTTGTAGTGTTGAGGATCATTTTTAAAAATTCCTGAGGACAATTCCACGCAG 825 || || || | | ||| |||||| | ||| | || | ||||| || |||||| Sbjct 24951 CGCTCGTGAGCGAAACGTTCAGGATCGTCTTTGACGATGATCGTGGACATCTCGACGCAG 25010 Query 826 TACCATAACGCAGTTGGTA 844 ||||| | ||||| |||| Sbjct 25011 TACCACAGAGCAGTAGGTA 25029 Score = 96.9 bits (106), Expect = 5e-16 Identities = 202/301 (67%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 6019 AATCAAATTACTGTACATCGTCACAAATGGCAAGATTAGCCGGGAAAGTATAGACGAATG 6078 ||| ||||| |||||||| | || |||| |||| | | ||| || | ||| ||| Sbjct 26204 AATTAAATTGATGTACATCATTACCGATGGTCAGATCAACAGGGGGAGCTTCGACACATG 26145 Query 6079 TTTGGAATTGAATAAAGAAATAGATTATGAAATGGTTGTTTTCCATGCATTCAATGAAGA 6138 ||| | | | ||| || | || |||| |||| |||||| ||||| || | | |||| | Sbjct 26144 TTTAGCACTTAATGAAAATATTCATTACGAAAAGGTTGTGTTCCACGCGCTGAGTGAACA 26085 Query 6139 CCCGGAAAAAATCGACCTTTTAGTAGCTGCACCTTTCTTCAAGAGCCGTTGCATCGTTTA 6198 | | || ||| | | ||| |||| ||||| ||||||||| || | |||| Sbjct 26084 ATTGAACTGCATTGACTTATCAGTTACTGCGTCTTTCATCAAGAGCCAATGTACTATTTA 26025 Query 6199 TCACAATACCGAACTTTGTAACCGTACTCATATTTCCAAGGAGTTTGATTATGACAAGAT 6258 | || | |||||| | | || ||||||| ||||||||||| || || | || Sbjct 26024 CCGTAACAACGAACTATTCGATGAAACCGATATTTCTAAGGAGTTTGACTACGATCAAAT 25965 Query 6259 CAGTAGCGACAACTTCGCAGTTGAAATGCAACAACTTATGTCTTATATTAAATTGAAGTT 6318 || ||||||||| || |||| || | || | |||||||||||||| ||||| Sbjct 25964 CACCTTCGACAACTTTGCTACGGAAAAAGAAAATCTGAAGTCTTATATTAAATACAAGTT 25905 Query 6319 C 6319 | Sbjct 25904 C 25904 >seq4679 Length=135627 Score = 95.1 bits (104), Expect = 2e-15 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||||||||||||||| ||||| || ||||| | | || | | || Sbjct 109027 TCTTCGGGACAACATCCAAGGAATCACGAAGCCTGCCATCCGAAGATTAGCAAGAAGAGG 109086 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||| | | || ||||| |||| ||||| | ||||| || | || | || Sbjct 109087 CGGTGTGAAGAGAATATCAGGATTAATCTACGAAGAAACTCGTGGCGTGCTAAAAGTGTT 109146 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || | | || |||| ||||| | ||||| || ||||| ||| | || ||||| Sbjct 109147 TCTAGAAAATGTGATCCGCGATGCCGTGACGTATACTGAACACGCCAAAAGAAAAACTGT 109206 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | |||||||| ||||| | ||||| | | | | || |||||||| Sbjct 109207 GACAGCGATGGACGTTGTCTATGCTTTGAAGAGGCAAGGAAGAACGCTGTACGGTTTTGG 109266 >seq4773 Length=162416 Score = 91.5 bits (100), Expect = 2e-14 Identities = 170/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 451 TGGACGAAGTCATTCAAATGAACTTTCTCCTCAAGAATATCGTCACGCAAAATTCCCTTG 510 || ||| | || | ||||| |||| |||| | || ||||| || | ||| | ||| Sbjct 15783 TGCACGTATTCCTCCAAATTTACTTCCTCCGAGATAACGTCGTCTCGAAGTATTTCTTTG 15724 Query 511 TGATTTAACTTTAGGTAATTCAGCTTGTATAGATTAGATGATTTTTCAATTTCACTGACT 570 || || ||||| | ||||| ||||| | | ||| | || | ||| ||||||||||| Sbjct 15723 TGCTTCAACTTCAAATAATTAAGCTTTTTCACATTCGCCGAATATTCTATTTCACTGACA 15664 Query 571 AGAAAACCATCTACAGTCTTGAAGATTTTCTCCAACAAATAATAAATTTTCTTTCTCCGT 630 || ||||| | |||| | | || |||||||| | || || || || | |||||| Sbjct 15663 AGGAAACCGTTTACATTACTAAAAATTTTCTCTACCATGTACAGAACCTTGTCTCTCCGC 15604 Query 631 TTTTGGAtttttttCAAAGTCATTACGTAACTTAGTAGTTCTTTTCGTTTCTCGATAGGC 690 | | ||||| |||| | ||||||| | || | || || ||||| || | ||| | Sbjct 15603 GATGGAATTTTCTTCAGAATCATTACATGTCTCATTAAATCCTTTCGCTTGTTGATGGTT 15544 Query 691 TTCAAATCTA 700 | ||| |||| Sbjct 15543 TCCAAGTCTA 15534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78995857352847