Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_006650.1 Length=18768 Score E Sequences producing significant alignments: (Bits) Value seq3300 116 4e-22 seq5405 104 3e-18 >seq3300 Length=26080 Score = 116 bits (128), Expect = 4e-22 Identities = 162/220 (74%), Gaps = 9/220 (4%) Strand=Plus/Plus Query 11414 AACGGCCACGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGCTACA 11473 ||||||| || ||||||| | ||||| ||||||||| | ||||||||||||||| || | Sbjct 10918 AACGGCCGCGTGGAGCCCGATTTTCAGTGTTAAATTAAACTTATAAATAATGGAGATAAA 10977 Query 11474 ACTCCGGGAATCGAGACTTAttttacta-aaattttctactcttttaggatcttttttc- 11531 |||||||||| || |||| | || || |||||| || |||| ||| |||||||| Sbjct 10978 ACTCCGGGAACAGA-ACTT-TAATAATAGAAATTTCCTTACCTTTAGGGAACTTTTTTCG 11035 Query 11532 aaatttcagataacttcaatatttttGAAGTTATAACTACAAAACGAAGACTCTCttttt 11591 ||||||| | || | ||| |||| |||||| | | ||||| || | |||| Sbjct 11036 AAATTTCTCAAAAAGT-TATAGTTTTTGAGTTATTAACAAAAAACTAA----ATGCTTTT 11090 Query 11592 ttctcttcgttttttgtttataacaaataaaatttttaat 11631 || || || | |||||| ||||||| | ||||||| || Sbjct 11091 TTTTCGTCTTAATTTGTTAATAACAATTGCAATTTTTTAT 11130 Score = 113 bits (124), Expect = 5e-21 Identities = 161/220 (73%), Gaps = 9/220 (4%) Strand=Plus/Plus Query 17942 AACGGCCACGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGCTACA 18001 ||||||| || ||||||| | ||||| ||||||||| | ||||||||||||||| || | Sbjct 10918 AACGGCCGCGTGGAGCCCGATTTTCAGTGTTAAATTAAACTTATAAATAATGGAGATAAA 10977 Query 18002 ACTCCGGGAATCGAGACTTattttacta-aaattttctacttttttaggatcttttttc- 18059 |||||||||| || |||| | || || |||||| || ||| ||| |||||||| Sbjct 10978 ACTCCGGGAACAGA-ACTT-TAATAATAGAAATTTCCTTACCTTTAGGGAACTTTTTTCG 11035 Query 18060 aaatttcagataacttcaatatttttGAAGTTATAACTACAAAACGAAGACTCTCttttt 18119 ||||||| | || | ||| |||| |||||| | | ||||| || | |||| Sbjct 11036 AAATTTCTCAAAAAGT-TATAGTTTTTGAGTTATTAACAAAAAACTAA----ATGCTTTT 11090 Query 18120 ttCTCTTCGTTTTTTGTTTATAACAAATAAAATTTTTAAT 18159 || || || | |||||| ||||||| | ||||||| || Sbjct 11091 TTTTCGTCTTAATTTGTTAATAACAATTGCAATTTTTTAT 11130 >seq5405 Length=730627 Score = 104 bits (114), Expect = 3e-18 Identities = 176/247 (71%), Gaps = 11/247 (4%) Strand=Plus/Plus Query 11226 AAAAATTTGTTAAATAACAAT---TAAATAA-CTTAAACAAAAATCAAGCTAAAtttttt 11281 ||||| | ||| | | ||||| ||||||| ||| | |||||| | ||| | ||||| Sbjct 597444 AAAAAATAGTTTATTTACAATATATAAATAAACTTTTAGAAAAAT-AGGCTGATTTTTTA 597502 Query 11282 tttG--CGGGGCTATATTCCTTTAAGTGTCTAGATAACACTATAATTTATTTAGATATTT 11339 || ||||| ||||| || |||||||| || | || |||||||||| | || ||| Sbjct 597503 TTCCAACGGGGAGTTATTCTTTCAAGTGTCTGGACACTACCATAATTTATTCAAATTTTT 597562 Query 11340 AAATTAATATTGAATGTTATCAAAATATTATTTTGTGTTGCATACTTTACTTGGCGGC-G 11398 ||||||||||| || || || | | |||| | ||| | | ||| | || || || | Sbjct 597563 AAATTAATATTTGTTGCTAAAAATAAAATATTGTATGTGGTACACTGTCTTTAGCAGCAG 597622 Query 11399 A-CGCCTAGGCCCCGAAACGGCCACGCGGAGCCCAAGTTTCAACGTTAAATTACAATTAT 11457 | ||| | ||| ||||||| ||| |||||| | |||| ||||||||| |||| | Sbjct 597623 AGTGCCCA--TACCGTAACGGCCGCGCAGAGCCCTATTTTCGGTGTTAAATTAAAATTTT 597680 Query 11458 AAATAAT 11464 ||||||| Sbjct 597681 AAATAAT 597687 Score = 104 bits (114), Expect = 3e-18 Identities = 176/247 (71%), Gaps = 11/247 (4%) Strand=Plus/Plus Query 17754 aaaaatttgttaaataacaat---taaataa-cttaaacaaaaatcaagctaaatttttt 17809 ||||| | ||| | | ||||| ||||||| ||| | |||||| | ||| | ||||| Sbjct 597444 AAAAAATAGTTTATTTACAATATATAAATAAACTTTTAGAAAAAT-AGGCTGATTTTTTA 597502 Query 17810 tttG--CGGGGCTATATTCCTTTAAGTGTCTAGATAACACTATAATTTATTTAGATATTT 17867 || ||||| ||||| || |||||||| || | || |||||||||| | || ||| Sbjct 597503 TTCCAACGGGGAGTTATTCTTTCAAGTGTCTGGACACTACCATAATTTATTCAAATTTTT 597562 Query 17868 AAATTAATATTGAATGTTATCAAAATATTATTTTGTGTTGCATACTTTACTTGGCGGC-G 17926 ||||||||||| || || || | | |||| | ||| | | ||| | || || || | Sbjct 597563 AAATTAATATTTGTTGCTAAAAATAAAATATTGTATGTGGTACACTGTCTTTAGCAGCAG 597622 Query 17927 A-CGCCTAGGCCCCGAAACGGCCACGCGGAGCCCAAGTTTCAACGTTAAATTACAATTAT 17985 | ||| | ||| ||||||| ||| |||||| | |||| ||||||||| |||| | Sbjct 597623 AGTGCCCA--TACCGTAACGGCCGCGCAGAGCCCTATTTTCGGTGTTAAATTAAAATTTT 597680 Query 17986 AAATAAT 17992 ||||||| Sbjct 597681 AAATAAT 597687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 59879058074387