Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_007988.1 Length=7760 Score E Sequences producing significant alignments: (Bits) Value seq1341 125 4e-25 seq31744 120 1e-23 seq2109 118 5e-23 seq64645 104 1e-18 >seq1341 Length=13534 Score = 125 bits (138), Expect = 4e-25 Identities = 224/323 (69%), Gaps = 12/323 (4%) Strand=Plus/Plus Query 6837 AAATGCAATTCCGATCACTTCCACTAATACTGTCCGTCCGGAGCACGTTG-TACGCGGTT 6895 |||||| | ||||||||||||| | || |||||| ||||| |||| | || |||| Sbjct 8045 AAATGCCCATACGATCACTTCCACCATTATTGTCCG----GAGCATGTTGATGCGTGGTT 8100 Query 6896 AACATATCATTCACTCGCAGCGATGATGCTGAGA---GAAGGGAATTACACTTAGTTGGT 6952 | |||| ||| | | ||| ||||| || | |||| |||||| | || |||| Sbjct 8101 CAAATATTATTTAACCACAGGAATGATTATGTTACAAGAAGAGAATTATGCCGAGCTGGT 8160 Query 6953 GAAACTTGAAAGACCAGATAACGCTATTGGCATGGCAACCAGAGACCGCTC---TACCCC 7009 || |||||||| ||| |||||| || || | || |||||| | | || ||| Sbjct 8161 GAGACTTGAAAAGCCATGAAACGCTGTTTATCTGACTACTGGAGACCACCCCCCTATCCC 8220 Query 7010 GTAAAATTGGTTACGTTGTACTCAGTAAAAGGAGTGTAGTCCCTCTCGAAAAACTTCTCA 7069 || ||||| |||||| ||||| | | | |||| || ||| | ||| |||||||| Sbjct 8221 AAAATATTGGGTACGTTAAGCTCAGCATCAAGGGTGTGGTTGCTCGCCAAAGACTTCTCA 8280 Query 7070 AGCACTACGGGAGCAGCTACCAACGAACACATGTCAAGCG-TCTTTTCCCAATGGGAAGG 7128 || ||||| ||||| | | | || ||||| |||| | | ||||| || |||| | Sbjct 8281 AGAACTACTAGAGCAACAATCGACACGCACATTTCAAACTCTGTTTTCTTAAAAGGAAAG 8340 Query 7129 AAATAGAAGTGGAATACATCTAC 7151 ||||||||||| |||| | |||| Sbjct 8341 AAATAGAAGTGAAATATAACTAC 8363 Score = 87.8 bits (96), Expect = 9e-14 Identities = 169/246 (69%), Gaps = 10/246 (4%) Strand=Plus/Plus Query 6848 CGATCACTTCCACTAATACTGTCCGTCCGGAGCACGTT-GTACGCGGTTAACATATCATT 6906 ||||||||||||| | || | |||| ||||| ||| | || |||| | |||| ||| Sbjct 8581 CGATCACTTCCACCATTATT----GTCCAGAGCATGTTAATGCGTGGTTCAAATATTATT 8636 Query 6907 CACTCGCAGCGATGAT---GCTGAGAGAAGGGAATTACACTTAGTTGGTGAAACTTGAAA 6963 | | ||| ||||| | | ||||| | |||| | || |||||| |||||||| Sbjct 8637 TAACCACAGGAATGATAAAGTTACAAGAAGAGGATTATGCCGAGCTGGTGAGACTTGAAA 8696 Query 6964 GACCAGATAACGCTATTGGCATGGCAACCAGAGAC--CGCTCTACCCCGTAAAATTGGTT 7021 ||| |||||| || || | || ||||| | | ||| ||| || ||||| | Sbjct 8697 AGCCATGAAACGCTGTTTATCTGACTACTGGAGACCACCCCCTATCCCAAAATATTGGCT 8756 Query 7022 ACGTTGTACTCAGTAAAAGGAGTGTAGTCCCTCTCGAAAAACTTCTCAAGCACTACGGGA 7081 ||||| ||||| | || | |||| || ||| | ||| |||||||||| ||||| || Sbjct 8757 ACGTTACGCTCAGCATAAAGGGTGTGGTTGCTCGCAAAAGACTTCTCAAGAACTACTAGA 8816 Query 7082 GCAGCT 7087 ||| || Sbjct 8817 GCAACT 8822 >seq31744 Length=697 Score = 120 bits (132), Expect = 1e-23 Identities = 217/312 (70%), Gaps = 13/312 (4%) Strand=Plus/Minus Query 6848 CGATCACTTCCACTAATACTGTCCGTCCGGAGCACGTTG-TACGCGGTTAACATATCATT 6906 |||| |||||||| | || |||||| ||||| ||| | || |||| | |||| ||| Sbjct 330 CGATTACTTCCACCATTATTGTCCG----GAGCATGTTAATGCGTGGTTCAAATATTATT 275 Query 6907 CACTCGCAGCGATGAT---GCTGAGAGAAGGGAATTACACTTAGTTGGTGAAACTTGAAA 6963 | | ||| ||||| | | ||||| | |||| | || |||||| |||||||| Sbjct 274 TAACCACAGGAATGATAAAGTTACAAGAAGAGGATTATGCCGAGCTGGTGAGACTTGAAA 215 Query 6964 GACCAGATAACGCTATTGGCATGGCAACCAGAGACCGCTC--TACCCCGTAAAATTGGTT 7021 ||| |||||| || || | || |||||| | | || ||| || ||||| | Sbjct 214 AGCCATGAAACGCTGTTTATCTGACTACTGGAGACCACCCCCTATCCCAAAATATTGGCT 155 Query 7022 ACGTTGTACTCAGTAAAAGGAGTGTAGTCCCTCTCGAAAAACTTCTCAAGCACTACGGGA 7081 ||||| ||||| | || | |||| || ||| | ||| |||||||||| ||||| || Sbjct 154 ACGTTACGCTCAGCATAAAGGGTGTGGTTGCTCGCAAAAGACTTCTCAAGAACTACTAGA 95 Query 7082 GCAGCTACCAACGAACACATGTCAAGCGTC--TTTTCCCAATGGGAAGGAAATAGAAGTG 7139 ||| ||| | || ||||| |||| | || ||||| || |||| |||||||||||| Sbjct 94 GCAACTATCGACACGCACATTTCAAAC-TCAATTTTCTTAAAAGGAAAGAAATAGAAGTG 36 Query 7140 GAATACATCTAC 7151 |||| | |||| Sbjct 35 CAATATAACTAC 24 >seq2109 Length=16474 Score = 118 bits (130), Expect = 5e-23 Identities = 218/315 (69%), Gaps = 11/315 (3%) Strand=Plus/Plus Query 6837 AAATGCAATTCCGATCACTTCCACTAATACTGTCCGTCCGGAGCACGTTG-TACGCGGTT 6895 |||||| | |||| |||||||| | || |||||| ||||| ||| | || |||| Sbjct 12396 AAATGCCCATACGATTACTTCCACCATTATTGTCCG----GAGCATGTTAATGCGTGGTT 12451 Query 6896 AACATATCATTCACTCGCAGCGATGAT---GCTGAGAGAAGGGAATTACACTTAGTTGGT 6952 | |||| ||| | | ||| ||||| | | ||||| | |||| | || |||| Sbjct 12452 CAAATATTATTAAGCCACAGGAATGATAAAGTTACAAGAAGAGGATTATGCCGAGCTGGT 12511 Query 6953 GAAACTTGAAAGACCAGATAACGCTATTGGCATGGCAACCAGAGACCGCTC--TACCCCG 7010 || |||| ||| ||| |||||| || || | || |||||| | | || ||| Sbjct 12512 GAGACTTAAAAAGCCATTAAACGCTGTTAATCTGACTACTGGAGACCACCCCCTATCCCA 12571 Query 7011 TAAAATTGGTTACGTTGTACTCAGTAAAAGGAGTGTAGTCCCTCTCGAAAAACTTCTCAA 7070 || ||||| |||||| ||||| | || | |||| || ||| | ||| ||||||||| Sbjct 12572 GAATATTGGCTACGTTACGCTCAGCATAAAGGGTGTGGTTGCTCGCAAAAGACTTCTCAA 12631 Query 7071 GCACTACGGGAGCAGCTACCAACGAACACATGTCAAGCG-TCTTTTCCCAATGGGAAGGA 7129 | ||||| ||||| ||| | || ||||| |||| | | |||||| || |||| || Sbjct 12632 GAACTACTAGAGCAACTATCGACACGCACATTTCAAACTCTGTTTTCCTAAAAGGAAAGA 12691 Query 7130 AATAGAAGTGGAATA 7144 |||||||||| |||| Sbjct 12692 AATAGAAGTGAAATA 12706 Score = 104 bits (114), Expect = 1e-18 Identities = 222/321 (69%), Gaps = 27/321 (8%) Strand=Plus/Plus Query 6849 GATCACTTCCACTAATACTGTCCGTCCGGAGCACGTT-GTACGCGGTTAACATATCATTC 6907 |||||||||||| | || ||||| ||||| ||| || || |||| | |||| ||| Sbjct 12932 GATCACTTCCACCATTATTGTCCA----GAGCATGTTAGTGCGTGGTTCAAATATTATTT 12987 Query 6908 ACTCGCAGCGATGATGCTGA---GAGAAGGGAATTACACTTAGTTGGTGAAACTTGAAAG 6964 | | ||| || || || ||||| | |||| | || ||||| |||||| || Sbjct 12988 AACCACAGGAATTATAATGTTACGAGAACAGGATTATTCCGAGCTGGTGGAACTTGGAAA 13047 Query 6965 ACCAGATAACGCTATTGGCA---TGGCAACCAGAGACCGCTCTACCCCGTAAAATTGGTT 7021 || ||| ||| ||| | || | ||| |||||||| |||||||| |||| | | Sbjct 13048 TGCA--TAA-GCTGTTGATAAACTGACGACCGGAGACCGCGCTACCCCG--AAATACGCT 13102 Query 7022 ACGTTGTACTCAG--TAA---AAGGA----GTGTAGTCCCTCTCGAAAAACTTCTCAAGC 7072 ||||| ||||| ||| || | |||| ||| | | ||| |||||| ||| Sbjct 13103 ACGTTTCGCTCAGCGTAACGTAACGCTCTGGTGTCGTCGTTTTTCAAAGACTTCTTAAGA 13162 Query 7073 ACTACGGGAGCAGCTACCAACGAACACA-TGTCAAGCGTCTTTTCCCAATGGGAAGGAAA 7131 ||||||||| || ||| |||| | || | | ||||||| | || |||||||| |||| Sbjct 13163 ACTACGGGATCAACTATCAAC-ACCATAATTTCAAGCGACATTGGTTAATGGGAAAGAAA 13221 Query 7132 TAGAAGTGGAATACATCTACG 7152 ||||||||||||| | ||||| Sbjct 13222 TAGAAGTGGAATAAACCTACG 13242 >seq64645 Length=1344 Score = 104 bits (114), Expect = 1e-18 Identities = 219/322 (68%), Gaps = 11/322 (3%) Strand=Plus/Plus Query 6837 AAATGCAATTCCGATCACTTCCACTAATACTGTCCGTCCGGAGCACGTT-GTACGCGGTT 6895 |||||| | |||| |||||||| | || ||||| ||||| ||| || || |||| Sbjct 40 AAATGCCCATACGATTACTTCCACAATTATTGTCCA----GAGCATGTTAGTGCGTGGTT 95 Query 6896 AACATATCATTCACTCGCAGCGATGAT---GCTGAGAGAAGGGAATTACACTTAGTTGGT 6952 | |||| ||| | | ||| ||||| | | |||| | |||| | || |||| Sbjct 96 CAAATATTATTTAACCACAGGAATGATAAAGTTACAAGAACAGGATTATGCCGAGCTGGT 155 Query 6953 GAAACTTGAAAGACCAGATAACGCTATTGGCATGGCAACCAGAGACCGCTC--TACCCCG 7010 || |||||||| ||| |||||| || || | || |||||| | | || ||| Sbjct 156 GAGACTTGAAAAGCCATGAAACGCTGTTTATCTGACTACTGGAGACCACCCCCTATCCCA 215 Query 7011 TAAAATTGGTTACGTTGTACTCAGTAAAAGGAGTGTAGTCCCTCTCGAAAAACTTCTCAA 7070 || ||||| |||||| ||||| | || | |||| || ||| | ||| ||||||||| Sbjct 216 AAATATTGGCTACGTTACGCTCAGCATAAAGGGTGTGGTTGCTCGCAAAAGACTTCTCAA 275 Query 7071 GCACTACGGGAGCAGCTACCAACGAACACATGTCAAGCG-TCTTTTCCCAATGGGAAGGA 7129 | ||||| ||||| ||| | | | ||| |||| | | ||||| || |||| | Sbjct 276 GAACTACTAGAGCAACTATCGATACGCCCATTTCAAACTCTGTTTTCTTAAAAGGAAACA 335 Query 7130 AATAGAAGTGGAATACATCTAC 7151 |||||||||| |||| | |||| Sbjct 336 AATAGAAGTGCAATATAACTAC 357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24692669884144