Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2172 183 2e-41 seq84480 170 2e-37 seq4140 107 2e-18 seq1544 104 2e-17 >seq2172 Length=16819 Score = 183 bits (202), Expect = 2e-41 Identities = 568/875 (65%), Gaps = 7/875 (1%) Strand=Plus/Minus Query 96132 ACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTTTGCGCGGGTCCACG 96191 |||||||||||||| | || |||||||| || || || | || || | | || Sbjct 8145 ACTCCAGTCCAGCCTCTTCCATACATGGCAACACCAACGACGATCTTCTTGGAGCTGACT 8086 Query 96192 CCTTGATTTGTGAGCAATTTAACGGCATGGTCCGTGTTGTACAGCTCGTTTGGGTTCCAA 96251 |||||| ||| |||| || | ||| || |||| |||| | ||||||| Sbjct 8085 CCTTGAGCCAAGAGAGATTTGACACCGAAGTCAGTTGTGTATGTCTCGCTGCGGTTCCAT 8026 Query 96252 CTCGGCGCGTACAGTGTAGTTTGGTATCCCAAATCAATGTTTGACCACGCGCCTTTAAAA 96311 | || |||| || || |||| || | | || |||| ||||| | || || || Sbjct 8025 GTAGGGGCGTGTAGACCAGAATGGTGGCCAAGAGCATTGTTGGACCAGGAACCCTTGAAG 7966 Query 96312 TCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACGTCGTATTTTACTACA 96371 ||||||||||| | || || | ||| | | ||| || || | | ||| | ||| || Sbjct 7965 TCGTAGCTCATCAAGAAGATATGGTCCATGTACTGCTGAGCGGCCTTGTAGTCTACGACC 7906 Query 96372 GCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTACGTTTTGCCCGT-TTG 96430 ||| ||||| || || ||||| || |||| ||||| | || || || ||| Sbjct 7905 TGAATCTTGTCCCAACCAGCGCTGATGGCTGAGGTCAGTTCGTATTTCTTTCCAGTCTTG 7846 Query 96431 CAGTTG-CAACTCGTCTAACATCACGCGCAATTCCTTTAATAGAATGTTGTACGTGTCAG 96489 | || || ||||| ||||| | | ||||||||| | || | ||| ||| | Sbjct 7845 --GCTGACAGCTCGTTCAACATTTCTCTCAATTCCTTCATCAGCTGGACGTAGATGTGAC 7788 Query 96490 CGTCGCGCTCTTTGTTGCCGAGCGTCGGGTTGGCGCCTTTACCGCCCGGAAATTCCCAGT 96549 |||| || || || | || ||||| || ||||| || || || ||||| | Sbjct 7787 CGTCT---TCGGGACCACCAAGGTTGGGATTGGCTCCCTTACCACCAGGGAACTCCCAAT 7731 Query 96550 CGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTCTCTGACGGAGTCTACAA 96609 | ||||| || || ||||| |||||||| || | || || | || ||| | || | Sbjct 7730 CAATGTCAACACCATCGAAGAATTTCCAGGTCTCGAGGAAGTCCTTCACTGAGGCGACGA 7671 Query 96610 ACACGCGCCGTTTTTCCGCGTCGTGCATGTAATAGAACGGGTCGGACAGTGTCCAGCCGC 96669 | | | |||||| |||| | | | |||| || |||| ||| ||||| || | Sbjct 7670 AGCGGTTTCTCTTTTCCTTGTCGGTGAAGAAGAAGAAAGGATCGGCCAGGGTCCATCCAC 7611 Query 96670 CGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTTGGCCGCCATCAACTGACCAA 96729 | | || || || || || |||| ||| | ||| |||| | ||||||||| || | Sbjct 7610 CAACTGAAGGAAGGATCTTCAGGTCTGGTCTCGCCTGTTTTAACATCATCAACTGGCCGA 7551 Query 96730 AGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTTTTGCGGTTTTTGTACTGCGG 96789 ||||||| ||||| ||||||||||| |||| || |||||||| ||||| || | || | Sbjct 7550 AGTTGCCCTTGTAAGGCTCGTTCCAGGCAGTCAAACCCTTTTGTGGTTTCTGAAGAGCAG 7491 Query 96790 CCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAGCGTTGCAGCG 96849 ||||||| || || || | ||||| || ||| | |||| ||| || |||||| Sbjct 7490 CCCAAGGATCATGGATTGACACTTTGAAGTCTTCCCTGCCCCTGCATGATTTTTGCAGAA 7431 Query 96850 CTTCAAAACTACCGGGTATGGTTTTAAGGGCATCGTTAAGGCCGTCGCCGCCACAAATGG 96909 || ||||| || || ||| | | ||||| | || || || || ||||| | Sbjct 7430 TTTGGAAACTGCCTTCAATCTGTTTCAAGCTGTCGTTGATACCATCTCCACCGCAAATTG 7371 Query 96910 GTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCGGCACTTTGTCCACCGGAAAGT 96969 | || || ||||| | | ||| | | || || | ||||| ||| || ||||| | Sbjct 7370 GGATGAAACCGTAAAGAAGATGAGTTAGATTAGGGATGGGCACGCGGTCAACTGGAAACT 7311 Query 96970 TACGACCATACACGCCCCATTCCACAAAATACGCA 97004 | | || || |||||||| || || || ||| Sbjct 7310 TCCTCAGGTAGACACCCCATTCGACGAAGTATGCA 7276 >seq84480 Length=6514 Score = 170 bits (188), Expect = 2e-37 Identities = 572/881 (65%), Gaps = 17/881 (2%) Strand=Plus/Minus Query 96131 CACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTTTGCGCGGGTCCAC 96190 |||||||||||| || || |||||||| || || || || | ||| || ||| || Sbjct 6304 CACTCCAGTCCAACCTCGTCCGTACATAGCAACACCGACGACAATCTTCTTGGGGCTGAC 6245 Query 96191 GCCTTGATTTGTGAGCAATTTAACGGCATGGTCCGTGTTGTACAGCTCGTTTGGGTTCCA 96250 |||||| ||| |||||||| | ||| || |||| ||| || ||||||| Sbjct 6244 TCCTTGAGCCAAGAGGAATTTAACACCGAAGTCAGTTGTGTATGTCTCCTTGCGGTTCCA 6185 Query 96251 ACTCGGCGCGTACAGTGTAGTTTGGTATCCCAAATCAATGTTTGACCACGCGCCTTTAAA 96310 || || | || || |||| || | ||| ||||| || || || || Sbjct 6184 TGCAGGGGCATGTAGACCAGCCTGGTGGCCAAGCGTGTCGTTGGACCAGGCACCCTTGAA 6125 Query 96311 ATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACGTCGTATTTTACTAC 96370 ||||||||||| | ||| || | || | | ||| || || | | ||| | || || Sbjct 6124 GTCGTAGCTCATCAAAAAGATGTGATCCATGTACTGCTGAGCGGCCTTGTAGTCAACAAC 6065 Query 96371 AGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTACGTTTTGCCCGT-TT 96429 ||| ||||| || | ||||| || |||| ||||| | || || || || Sbjct 6064 CTGAATCTTGTCCCAACCAGAGCTGATGGCTGAGGTCAGTTCGTATTTCTTTCCAGTCTT 6005 Query 96430 GCAGTTG-CAACTCGTCTAACATCACGCGCAATTCCTTTAATAGAATGTTGTACGTGTCA 96488 | | || || ||||| |||||| | | ||||||||| | || || |||| | Sbjct 6004 G--GCTGACAGCTCGTTCAACATCTCTCTCAATTCCTTCATCAGC----TGCACGT---A 5954 Query 96489 GCGTCGCGC-TCTTTGTTGCCG---AGCGTCGGG-TTGGCGCCTTTACCGCCCGGAAATT 96543 | | | | |||| | || || |||||| ||||| || ||||| || || || | Sbjct 5953 GATTTGACCGTCTTCGGGACCACCTAG-GTCGGGGTTGGCTCCCTTACCACCAGGGAACT 5895 Query 96544 CCCAGTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTCTCTGACGGAGT 96603 |||| || ||||| || || ||||| |||||||| || | || || | || ||| Sbjct 5894 CCCAATCAATGTCAACACCATCGAAGAATTTCCAGGTCTCGAGGAAGTCCTTCACTGAGG 5835 Query 96604 CTACAAACACGCGCCGTTTTTCCGCGTCGTGCATGTAATAGAACGGGTCGGACAGTGTCC 96663 | || || || | |||||| |||| | | | | || || |||| ||| |||| Sbjct 5834 CGACGAAGCGGCTTCTCTTTTCCTTGTCGGTGAAGAAGAAAAAGGGATCGGCCAGGGTCC 5775 Query 96664 AGCCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTTGGCCGCCATCAACT 96723 | || || | ||| || || || || |||| ||| | ||| |||| | |||||||| Sbjct 5774 ATCCACCAACAGAAGGAAGGATCTTCAGGTCTGGTCTCGCCTGTTTCAACATCATCAACT 5715 Query 96724 GACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTTTTGCGGTTTTTGTA 96783 | || |||||||| ||||| ||||||||||| | | || ||||| || ||||| || | Sbjct 5714 GGCCGAAGTTGCCCTTGTAAGGCTCGTTCCATGAACCCAAACCCTTCTGTGGTTTCTGAA 5655 Query 96784 CTGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAGCGTT 96843 || |||||||| || || || | ||||| || ||| | ||| ||| || | || Sbjct 5654 GAGCAGCCCAAGGATCATGGATGGACACTTTGAAGTCTTCCCTGCCGCTGCATGATCTTT 5595 Query 96844 GCAGCGCTTCAAAACTACCGGGTATGGTTTTAAGGGCATCGTTAAGGCCGTCGCCGCCAC 96903 |||| |||| ||||| || || ||| | ||||| | ||| || || || | Sbjct 5594 GCAGAGCTTGGAAACTGCCTTCAATCTCTTTCAAACTGTCGTTGATGCCATCTCCACCGC 5535 Query 96904 AAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCGGCACTTTGTCCACCG 96963 |||| || || || ||||| | | ||| | | ||||| | ||||| ||| || | Sbjct 5534 AAATTGGGATGAAACCGTAAAGAAGATGAGTTAGATTGGGGATAGGCACACGGTCAACGG 5475 Query 96964 GAAAGTTACGACCATACACGCCCCATTCCACAAAATACGCA 97004 | || || | || || |||||||| || || || ||| Sbjct 5474 GGAACTTCCTCGGGTAGACACCCCATTCGACGAAGTATGCA 5434 >seq4140 Length=56097 Score = 107 bits (118), Expect = 2e-18 Identities = 167/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| ||||| || |||| || || ||||| ||||| || ||||||||||| | Sbjct 50446 CCTCCTCTAAGCCTAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAA 50387 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | |||||||| ||||| || || | ||||| ||||| || || || Sbjct 50386 AGAGTGCGGCCATCCTCCAACTGTTTACCAGCGAAGATAAGTCGCTGCTGATCTGGTGGG 50327 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || |||||| || || | | | |||||| | |||| Sbjct 50326 ATTCCCTCCTTGTCCTGGATCTTTGCT--TTGACATTCTCAATAGTGTCTGAAGCCTCCA 50269 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGC 16943 || | |||||||||||| || || || ||||| || || ||||||||| |||||| Sbjct 50268 CCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTGTAGC 50212 >seq1544 Length=14195 Score = 104 bits (114), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| || || ||||| || ||||| ||||||||||| | Sbjct 3032 CCACCACGGAGACGCAAGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAA 3091 Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | ||| |||||| ||||| |||||||| || ||||||| ||||| ||||| Sbjct 3092 AGGGT----GCGTCCATCTTCCAACTGTTTGCCGGCGAAAATAAGACGCTGCTGGTCTGG 3147 Query 16825 AGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC 16884 || | ||| || ||||| ||| | ||| || | | | || || |||||| Sbjct 3148 GGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATGGTATCAGAGGGCTC 3207 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||||||||| || |||| ||||||||||| |||||||| Sbjct 3208 AACTTCCAGGGTGATGGTTTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 3258 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | |||||| | ||| || || || ||||| || ||||||||||| | Sbjct 3716 CCTCCTCGAAGACGCAGTACAAGATGGAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAA 3775 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || ||||| || ||||| || | ||||| ||||||||||| || Sbjct 3776 AGGGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATAAGACGCTGTTGGTCTGGGGGG 3835 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || || || ||| | ||| || | | | |||||| || || Sbjct 3836 ATGCCTTCCTTATCCTGAATCTTGGCCTTGACATTCTCAATAGTGTCAGAAGGTTCAACC 3895 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || |||| ||||||||||| |||||||| Sbjct 3896 TCGAGGGTGATGGTCTTACCAGTCAAGGTTTTGACAAAGATCTGCAT 3942 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | |||||| | ||| || ||||| ||||| || || |||||||| | Sbjct 3944 CCACCTCGAAGACGCAGTACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCAGAG 4003 Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | ||| |||||| |||||||| || || || | ||||| ||||| ||||| Sbjct 4004 AGGGT----GCGTCCATCTTCCAATTGCTTACCGGCGAAGATAAGACGCTGCTGGTCTGG 4059 Query 16825 AGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC 16884 || | ||| || ||||| ||| | ||| || | | | ||||||| || || Sbjct 4060 GGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATAGTGTCGGAAGGTTC 4119 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || |||| || ||||| ||||||||||| Sbjct 4120 GACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 4170 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | |||||||| || || || || ||||| || ||||||||||| | | Sbjct 5084 CCACCACGAAGACGCAGTACCAAGTGGAGTGTAGATTCCTTCTGGATGTTGTAGTCAGAC 5143 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| || | || || || || | || || ||||| || || || Sbjct 5144 AGTGTGCGGCCGTCTTCTAGCTGCTTTCCAGCGAAGATCAGTCGCTGCTGATCTGGTGGA 5203 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| ||||| ||| || || | | | |||||| |||||| Sbjct 5204 ATGCCTTCTTTGTCTTGAATTTTAGCT--TTTACATTTTCAATAGTGTCTGAGGGCTCAA 5261 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||| | ||||| ||||| || |||| ||||| || |||||||||||| || Sbjct 5262 CTTCAAGAGTGATAGTTTTACCCGTCAAGGTTTTCACGAAAATCTGCATTATG 5314 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| || || ||||| ||||| || ||||||||||||| Sbjct 4628 CCACCACGGAGACGCAAGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAA 4687 Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | ||| |||||| |||||||| ||||| || | || || ||||| ||||| Sbjct 4688 AGGGT----GCGTCCATCTTCCAATTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGG 4743 Query 16825 AGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC 16882 || | ||| || ||||| || || || ||| || | | | ||| || ||| Sbjct 4744 GGGGATGCCTTCCTTGTCCTGGATCTTGGC--CTTGACATTCTCAATAGTATCAGAAGGC 4801 Query 16883 TCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| ||| | || || ||||| || ||||| ||||| || ||||||||||| Sbjct 4802 TCCACTTCTAGTGTTATTGTTTTGCCTGTCAGTGTTTTTACGAAAATCTGCAT 4854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404659571209210