Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4228 520 1e-142 >seq4228 Length=62806 Score = 520 bits (576), Expect = 1e-142 Identities = 1182/1757 (67%), Gaps = 42/1757 (2%) Strand=Plus/Minus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 || ||||| || || || ||||||||||| ||||| | ||| | ||||| | || ||| Sbjct 20067 GCAGGTTTTGTGCGAAGGTAGTACATTCCTGTTTTCAAACCCATTTTCCATGCATAGAAA 20008 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 || ||| | | ||| || | || || || | ||||||||| | || || ||| Sbjct 20007 TGAATAGATGACAATTTACCGTAGTTTGGTTCAGCAACATGGATATTAAAGGACTGGCTT 19948 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 |||||||| || || || ||||| |||||||||| ||| | || ||| | ||||||| Sbjct 19947 TGATCGATAAATGCACCTCTGTCGGCAGCCATTTGTATTGTAGTTTTTACAGAAATTTCC 19888 Query 62051 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTGTATTCT--GAATGGA 62106 || | ||||||||| || || |||| | |||| |||| | || || || |||| || Sbjct 19887 CAGACAGTTTTATACAAGTCTCTTATT-TCTTTAGGAATAGATTCAATGCTTTGAATAGA 19829 Query 62107 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62166 |||| || || || ||| || || || || | |||||| | || ||||| Sbjct 19828 TCCATTATTGTGGATTATAAGATTTTTCATATCTTCGTCCCATAAATCAGCTTCAGTTAA 19769 Query 62167 AAC-TCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62225 | | | ||| || || |||| || ||||| || || || ||||| || | | || Sbjct 19768 ATCATGTAACAAG-TGATGATTCACCACTTGGAACTCACCCGACAAGACACGTCTTTGGT 19710 Query 62226 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62285 | || || ||| | ||||| | || |||||||||||||| || || || || || | Sbjct 19709 ATATGTTTGATGTAAAAGGTTCAAATGATTCATTATTTCCCAATATCTGTGCTGTGGAAG 19650 Query 62286 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATC 62343 |||| ||||||||||| | ||||| |||||||||||| ||||| || || || || Sbjct 19649 CAGTTGGCATAGGTGCTAGCAATAGTGAATTTCTAAGACC--ATGTTTTGCAATCTTCTC 19592 Query 62344 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 62403 |||||| | ||||| | ||| | ||| | || || | Sbjct 19591 TTTTAGTGAATCCCAGTCCCACAAATCTGTTGGGGTCTTGTTCCACATGTCATACTGCAA 19532 Query 62404 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62463 ||||| | || || ||| |||| || || ||| ||| | |||||| |||| Sbjct 19531 TATACCTTGGCTTGCAGGGCTGCCTTCATAAGTCTCATATACTCCATGCTTCTCGGCTAA 19472 Query 62464 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 62523 |||||| || ||||| | |||||| || || || ||||| || || | | ||||| || Sbjct 19471 TTCACAGCTAGCCTCCAGTGCACCATAGTAGATTGTTTCAAATATTTGTTGATTTA-ATT 19413 Query 62524 TT---GC-GCTTCCAGGCTATCAAATGG-ATAAT--TTAAGAGAATAAACGCGTCTGCTA 62576 || || ||||| ||| ||| |||| || |||| || ||| || || |||| Sbjct 19412 TTATAGCAGCTTC---GCTTTCATATGGTATGCGCATTAA---AACAAAAGCATCAGCTA 19359 Query 62577 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAA 62636 |||||||||| ||||| || || ||||| || ||| |||| || ||| || ||||| | Sbjct 19358 ATCCTTGAACTCCAATTCCAATGGGTCTGTGCCTCATATTTGATTTTTTTGCCTCTGGCA 19299 Query 62637 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACC-ACA 62695 || ||| | || | ||| |||||||| || ||||| || | || ||| | || Sbjct 19298 CTGGGTAAAAGTTCACATCAATAATTTTGTTCAGATT-CTCAGTTATAGTTTTAGTGACT 19240 Query 62696 TCCTTCAGTTTGAGAAAATCAAATCGCC---CATCTATTACAAACATGTTCAATGCAACA 62752 || |||| ||||| ||||| || |||| |||||||||| || ||||||| Sbjct 19239 TCTTTCAATTTGATAAAATTGTATGTTTTATCATCATTTACAAACATATTTAATGCAATT 19180 Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 || || | ||| || || || || |||| || | ||||| || || ||||||||| Sbjct 19179 GAAGCTAAATTGCAGACAGCAACTTCATCTGCTGAAGTATATTCTACAATTTCAGTGCAA 19120 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 || || || || || ||||| |||| ||| | || ||||| ||| |||| || | ||| Sbjct 19119 AGGTTGCTGCATTTAATGGTGCCTAGATTCTTCTGGTTACTTTTTCTGTTGCATGAATCT 19060 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 62932 |||||||| ||| |||| || || ||||||| || | ||| || || |||||||| | Sbjct 19059 TTATAAAGCATGTATGGTGTTCCTGTTTCAACTTGTGCTTCAATTATAGCTTTCCACAAA 19000 Query 62933 ACTCGAGCCT----TTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAA 62988 || |||| || || || | | || || ||| ||| |||||| Sbjct 18999 ACCTGAGCTCGCACTTGTTTTACAAAGCGACCT----TCCTGTTCATATTTCTCATACAA 18944 Query 62989 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAA 63048 | ||| || || ||||||||| || | | ||||| || |||| |||||||| | Sbjct 18943 TGCTTCAAATTCTTCTCCCCAACAATCGGATAAACCAGGGCAATCATGAGGACACATTAT 18884 Query 63049 CGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 63107 ||| ||| | | | |||| ||| ||||||||| | ||| || ||||| | || Sbjct 18883 ACTCCAATCTTGATTA-CTTTCAACTCTTTTCATAAATAAATCTGGTATCCATAAGGCAT 18825 Query 63108 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63167 ||| || || || | | ||| || || || ||||||||||| | ||| || || Sbjct 18824 AAAACAGTTCCCTAGCACGTACTTCTTCTTTCCCAGTATTCTTTTTCAAATCCAGAAATT 18765 Query 63168 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63227 | | || |||| |||||| |||||||| |||||||| | | ||||| | ||| || | Sbjct 18764 CAAATATGTCAGCATGCCATGGTTCCAAATATATGGCAAATGCGCCAGGTCTTTTATTAC 18705 Query 63228 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 63287 |||| ||||| | ||| | || ||||| || |||||||| ||||| || | || ||||| Sbjct 18704 CTCCTTGATCGACGTAACGCGCTGTGTTGTTGTAAACTCTTAACATCGGCACAAGACCAT 18645 Query 63288 TGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATA 63347 | || |||||| || || | ||||| | || ||| | |||| || | Sbjct 18644 TCGACACACCATTTGTACCAGCTATATAAGTACCTTTGGATCTAATACAGTGAACATGGA 18585 Query 63348 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 63407 | || || || ||||| |||||| |||| ||| ||| |||||| |||||||| || | Sbjct 18584 GGCCAATCCCACCTGCTGATTTAGAAATTAGTGCACATTGTTTTAGAGTATCATAAATTC 18525 Query 63408 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63467 | || ||||||||||| ||||| | || || || ||||| ||| |||| | Sbjct 18524 CTTCAATACTATCATCTTTCATGGCTATAAGGAAGCAAGAAGACAGTTGAGGACGTGGGG 18465 Query 63468 TTCCCGCATTAAATAAG-GTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 | | || | | | ||| || || || || ||||| |||||||||| |||| |||| Sbjct 18464 TCGCTGC-TGAGAAAAGAGTTGGGCTTGCATGTGTAAAATATTTTTCAGATAGTAAATTG 18406 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || | ||||||| ||| ||||| |||||| || | | || | ||| | | Sbjct 18405 TATGTGTTAATAGCTCCGTCAATATCTTCACCATGAATGCCAATGGAAACCCTCATGAGC 18346 Query 63587 ATGTGCTGAGGTCTTTC 63603 |||||||| || ||||| Sbjct 18345 ATGTGCTGCGGCCTTTC 18329 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 63821 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 ||||| ||||||||||||| ||| || | ||| | ||| || || || || |||||||| Sbjct 16052 TTTTTGGTTTCTTTGTGTAAATTAGAAATGGCCAATCTTGCAGCAAGTATTGCATAATCT 15993 Query 63881 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 63940 ||||| | ||||| || |||||| ||||||| || | | || | ||| || ||| Sbjct 15992 GGATGATCAGTAGTCATGGTTGCTGCTGTTTCGGCAGCTAAGTTATCAAGTTCCACAGTT 15933 Query 63941 GTTACACCATTATATATTCCTTGGATAACCTTCATAGCTAT 63981 || || || ||||| || ||| || |||| || ||| Sbjct 15932 GTCACTCCCGAGTATATCCCACTGATGACTTTCAGAGTTAT 15892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632944675608400