Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq2172 199 3e-46 seq84480 197 1e-45 seq4167 87.8 1e-12 seq1544 86.0 4e-12 >seq2172 Length=16819 Score = 199 bits (220), Expect = 3e-46 Identities = 497/743 (67%), Gaps = 15/743 (2%) Strand=Plus/Minus Query 83994 TGGTAGCCCAAATCCGTGTTTGACCAAGCACCTTTAAAATCATAATTCATTAAAAATATT 84053 |||| ||| | | | |||| ||||| | ||| || || || || |||| || || || Sbjct 8004 TGGTGGCCAAGAGCATTGTTGGACCAGGAACCCTTGAAGTCGTAGCTCATCAAGAAGATA 7945 Query 84054 TTTCCTAAAGACTTTTGCGCCTCGTCATAGTTTACCACGGCAATCTTGTCGTAACCCGCA 84113 | | | ||| || || | | |||| ||| || ||||||||| |||| || Sbjct 7944 TGGTCCATGTACTGCTGAGCGGCCTTGTAGTCTACGACCTGAATCTTGTCCCAACCAGCG 7885 Query 84114 CTAATAGCGCTTGTTAATTCGTAAACCCTGCCAGTTTGCGATTCTAGCTCGTCTAACATT 84173 || || || || | |||||| | | ||||| | | | ||||||| |||||| Sbjct 7884 CTGATGGCTGAGGTCAGTTCGTATTTCTTTCCAGTCTTGGCTGACAGCTCGTTCAACATT 7825 Query 84174 GCGCGCAGTTCCTCTAATATTAAAATGTATGTTTTGGCGTCACGTTCAGCATCCCCCAAC 84233 | | || ||||| | | | ||| | | |||| ||| | | || |||| Sbjct 7824 TCTCTCAATTCCTTCATCAGCTGGACGTAGATGTGACCGTC---TTCGGGA-CCACCAAG 7769 Query 84234 GACGGG-TTGGCTCCTTTGCCTCCCGGAAATTCCCAATCGATGTCTACACCGTCGAAAAA 84292 | ||| |||||||| || || || || || |||||||| ||||| ||||| ||||| || Sbjct 7768 GTTGGGATTGGCTCCCTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAGAA 7709 Query 84293 TTTCCATACTTGTAAAAACTCCTTAACCGAATTTACAAAAACGTTTCTTTTTTCAACATT 84352 |||||| | | || ||||| || || || || |||||| ||||| || Sbjct 7708 TTTCCAGGTCTCGAGGAAGTCCTTCACTGAGGCGACGAAGCGGTTTCTCTTTTCC---TT 7652 Query 84353 GTGCATGAA--ATAA-AACGGGTCCGACAACGTCCATCCTCCTATGGACGGAAGAATCTT 84409 || |||| | || || || || | || |||||||| || | || ||||| ||||| Sbjct 7651 GTCGGTGAAGAAGAAGAAAGGATCGGCCAGGGTCCATCCACCAACTGAAGGAAGGATCTT 7592 Query 84410 TAGGTGCGGGTTCGCCAATTTAGCTGCCATCAATTGTCCAAAATTGCCTTTATACGGTTC 84469 |||| || ||||| ||| |||||| || || || ||||| || || || || Sbjct 7591 CAGGTCTGGTCTCGCCTGTTTTAACATCATCAACTGGCCGAAGTTGCCCTTGTAAGGCTC 7532 Query 84470 GTTCCAAGCGGACACGCCCTTTTGGGGCTTTTGTACGGCGGCCCACGGATCGTGGATGGC 84529 |||||| || | || |||||||| || || || | || ||||| ||||| ||||| | Sbjct 7531 GTTCCAGGCAGTCAAACCCTTTTGTGGTTTCTGAAGAGCAGCCCAAGGATCATGGATTGA 7472 Query 84530 AATTTTAAAATCCGCACGTCCCCTGCACGATCGTTGCAGAGATTCGAAACTACCGGGTAT 84589 | ||| || || | | |||||||| ||| ||||||| || |||||| || || Sbjct 7471 CACTTTGAAGTCTTCCCTGCCCCTGCATGATTTTTGCAGAATTTGGAAACTGCCTTCAAT 7412 Query 84590 CACTTTGAGAGCA-TCGTTTATTCCATTACCGCCGCAAATGGGTATGAAACCGTACAACA 84648 | ||| | ||| ||||| || |||| || |||||||| || ||||||||||| || | Sbjct 7411 CTGTTTCA-AGCTGTCGTTGATACCATCTCCACCGCAAATTGGGATGAAACCGTA-AAGA 7354 Query 84649 AG-TGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAATTGCGCCCGTACACTCCC 84707 || || | || ||| || | ||| || ||| || ||||| || | | ||| || ||| Sbjct 7353 AGATGAGTTAGATTAGGGATGGGCACGCGGTCAACTGGAAACTTCCTCAGGTAGACACCC 7294 Query 84708 CATTCAACAAAATACGCAGCAAC 84730 ||||| || || || ||| |||| Sbjct 7293 CATTCGACGAAGTATGCACCAAC 7271 >seq84480 Length=6514 Score = 197 bits (218), Expect = 1e-45 Identities = 346/498 (69%), Gaps = 8/498 (2%) Strand=Plus/Minus Query 84237 GGGTTGGCTCCTTTGCCTCCCGGAAATTCCCAATCGATGTCTACACCGTCGAAAAATTTC 84296 ||||||||||| || || || || || |||||||| ||||| ||||| ||||| |||||| Sbjct 5922 GGGTTGGCTCCCTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAGAATTTC 5863 Query 84297 CATACTTGTAAAAACTCCTTAACCGAATTTACAAAAACGTTTCTTTTTTCAACATTGTGC 84356 || | | || ||||| || || || || | |||| ||||| |||| Sbjct 5862 CAGGTCTCGAGGAAGTCCTTCACTGAGGCGACGAAGCGGCTTCTCTTTTCC---TTGTCG 5806 Query 84357 ATGAA--ATAAAACGGG-TCCGACAACGTCCATCCTCCTATGGACGGAAGAATCTTTAGG 84413 |||| | |||| ||| || | || |||||||| || | || ||||| ||||| ||| Sbjct 5805 GTGAAGAAGAAAAAGGGATCGGCCAGGGTCCATCCACCAACAGAAGGAAGGATCTTCAGG 5746 Query 84414 TGCGGGTTCGCCAATTTAGCTGCCATCAATTGTCCAAAATTGCCTTTATACGGTTCGTTC 84473 | || ||||| ||| |||||| || || || ||||| || || || |||||| Sbjct 5745 TCTGGTCTCGCCTGTTTCAACATCATCAACTGGCCGAAGTTGCCCTTGTAAGGCTCGTTC 5686 Query 84474 CAAGCGGACACGCCCTTTTGGGGCTTTTGTACGGCGGCCCACGGATCGTGGATGGCAATT 84533 || | || ||||| || || || || | || ||||| ||||| ||||||| | | Sbjct 5685 CATGAACCCAAACCCTTCTGTGGTTTCTGAAGAGCAGCCCAAGGATCATGGATGGACACT 5626 Query 84534 TTAAAATCCGCACGTCCCCTGCACGATCGTTGCAGAGATTCGAAACTACCGGGTATCACT 84593 || || || | | || ||||| |||| |||||||| || |||||| || ||| || Sbjct 5625 TTGAAGTCTTCCCTGCCGCTGCATGATCTTTGCAGAGCTTGGAAACTGCCTTCAATCTCT 5566 Query 84594 TTGAGAGCATCGTTTATTCCATTACCGCCGCAAATGGGTATGAAACCGTACAACAAG-TG 84652 || | | ||||| || |||| || |||||||| || ||||||||||| || ||| || Sbjct 5565 TTCAAACTGTCGTTGATGCCATCTCCACCGCAAATTGGGATGAAACCGTA-AAGAAGATG 5507 Query 84653 TGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAATTGCGCCCGTACACTCCCCATTC 84712 | || ||| || | || || ||| ||||| || || | | ||| || |||||||| Sbjct 5506 AGTTAGATTGGGGATAGGCACACGGTCAACGGGGAACTTCCTCGGGTAGACACCCCATTC 5447 Query 84713 AACAAAATACGCAGCAAC 84730 || || || ||| |||| Sbjct 5446 GACGAAGTATGCACCAAC 5429 >seq4167 Length=57674 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || |||| || ||||| || || | ||| ||||| || Sbjct 13905 ATGCAAATTTTCGTCAAGACCCTAACTGGTAAAACGATCACATTAGAAGTTGAAGCTTCA 13846 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||||| ||||||||||| | || | |||| Sbjct 13845 GACACAATCGAGAATGTGAAAGCCAAAATCCAAGATAAAGAGGGGATCCCACCAGACCAG 13786 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||| || ||||| || || ||||| | || | ||||||||||| Sbjct 13785 CAGAGGTTGATCTTCGCCGGCAAGCAGCTGGAAGACGGACGCACACTCTCCGATTACAAT 13726 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || ||||||||||| |||||| | |||||| | || |||| ||| Sbjct 13725 ATCCAAAAGGAATCTACACTTCATTTAGTATTAAGGTTGAGAGGTGGA 13678 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | |||||||| || || ||||| || || | ||| || | | Sbjct 17554 AATGCAAATCTTTGTCAAAACATTGACTGGTAAAACAATAACTTTAGAAGTTGAGCCATC 17495 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || |||| ||||| || || || || | || | |||| Sbjct 17494 AGACACAATCGAGAATGTTAAAGCTAAAATCCAAGACAAGGAAGGCATTCCACCAGACCA 17435 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || |||| ||||| || || || || || |||||| || | |||||||||| Sbjct 17434 GCAACGACTGATCTTCGCCGGTAAGCAGCTGGAAGATGGCCGCACGCTTTCCGATTACAA 17375 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||||||||||||| | || ||||| | || || || Sbjct 17374 TATTCAGAAGGAATCTACTCTTCATTTAGTGCTACGTCTGCGTGGTGG 17327 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || ||||| |||||||| ||||| || || | Sbjct 16641 ATGCAAATTTTTGTCAAAACCCTGACTGGCAAGACCATTACTTTGGAAGTCGAGGCTTCT 16582 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || |||||| || |||||||| | || | |||| Sbjct 16581 GACACAATCGAAAATGTGAAAGCCAAAATTCAAGACAAAGAGGGAATCCCCCCAGACCAG 16522 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 |||||| | ||||| ||||||||||| || |||||| | | ||| | | ||||| | Sbjct 16521 CAGAGATTGATCTTCGCTGGCAAACAGCTGGAAGATGGTCGCACACTCT--CAGATTATA 16464 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | || ||||| ||||| || || || |||| ||||| | || || || Sbjct 16463 ACATCCAGAAAGAATCCACACTCCACTTGGTTCTACGTCTGCGTGGTGG 16415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||| ||||| || || | || || || ||||| ||||| || || |||| |||| | Sbjct 18013 CAACATGCAGATCTTCGTGAAGACTTTGACGGGGAAAACAATCACTTTGGAGGTGGAACC 17954 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || || | | || |||| || ||| || || || || | ||| | Sbjct 17953 CTCTGATACCATCGAAAATGTTAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCCGA 17894 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||| |||||| | ||||| || || || ||||| |||||| | ||| | |||| || Sbjct 17893 CCAGCAGAGATTGATCTTCGCCGGAAAGCAACTGGAAGATGGACGCACTCTATCCGACTA 17834 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||| |||||||||||||| ||||| |||| | ||| | |||| || Sbjct 17833 CAATATCCAGAAGGAATCTACACTTCACCTGGTGCTGCGTCTCAGAGGTGG 17783 >seq1544 Length=14195 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || ||||| ||||| ||| | || ||| | | Sbjct 5082 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAACCTTCT 5023 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || ||| ||||| || || | ||| | |||| Sbjct 5022 GACACTATTGAGAATGTCAAGGCCAAGATTCAAGATAAGGAAGGCATCCCTCCAGACCAG 4963 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| |||| ||||| |||||||||||||| |||||| || | | |||||||| Sbjct 4962 CAGCGACTGATCTTCGCTGGCAAACAACTTGAAGATGGTCGTACCCTCTCTGATTACAAC 4903 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| ||||| ||| | ||| | ||| | || ||||| Sbjct 4902 ATCCAGAAGGAATCCACTCTCCATCTTGTACTGCGTCTCCGTGGAGG 4856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357746040384766