Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq4850 89.7 1e-14 >seq4850 Length=185446 Score = 89.7 bits (98), Expect = 1e-14 Identities = 254/383 (66%), Gaps = 13/383 (3%) Strand=Plus/Plus Query 3160 CTGCACGCGCAAAACTCTTACGCCTACAAATACTTTGGCTGCGAGCTGCTAAACTTTGTC 3219 |||||| ||||||||| || || | | | ||| ||||||| || | ||||| || Sbjct 173395 CTGCACACGCAAAACTTCTATGCGTTCCGTTTCTTCATCTGCGAGGTGTTGAACTTCATC 173454 Query 3220 AACGTTGTCGCACAGATATGCTTCATGAATGCCTTTATAGGCGAAGACTTTTTGTTGTAC 3279 ||||| |||| ||||| | ||||||| | |||| | | || ||| || | |||| Sbjct 173455 AACGTCGTCGGCCAGATCTTCTTCATGGACTTCTTTCTGGACGGAGAGTTCTCCACGTAC 173514 Query 3280 GGAATCTATGTTACCTTCTTCAACCAG--GAAGCCGCCCATCCGAACATGACGAACCCCA 3337 || | | || ||||| || | ||||| || | || |||| | Sbjct 173515 GGCAGTGACGTGGTGAGCTTCACTGAGATGGAGCCGGAGGAGCG--CGTGG---ACCCGA 173569 Query 3338 TGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCGGGCT 3397 || |||| ||||| | | ||| || || || ||||| |||||||| ||||| Sbjct 173570 TGGCCAGAGTGTTTCCTAAGGTGACTAAGTGCACCTTCCACAAGTACGGTCCCTCGGGAA 173629 Query 3398 CCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCT 3457 || || | || | ||| || || ||| | || || ||| | |||||||||||||||| Sbjct 173630 CCGTGCAGAAGTTCGACGGCCTGTGCGTGCTGCCACTGAATATCGTCAACGAGAAGATCT 173689 Query 3458 ACATTTTCCTCTGGTTCTGGTTCTACG-TGCTAGCCATCATCAGCGG--TATCGTTGTTC 3514 || | || || ||||||||||| || | | || | ||| | || || | ||| || || Sbjct 173690 ACGTGTTTCTGTGGTTCTGGTT-TATGATTCTGTCGATCCTGAGTGGAATTTCGCTGATC 173748 Query 3515 TGTACCGCATTGCTCTGCTAGCG 3537 |||||||| ||| || ||||| Sbjct 173749 --TACCGCATGGCTGTGGTAGCG 173769 Score = 77.0 bits (84), Expect = 8e-11 Identities = 71/90 (79%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 3410 ACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCT 3469 |||| | ||| |||||||| || ||||| |||||||||||||||||| | ||||| | Sbjct 9205 ACGACGCACTGTGCATCCTGCCACTCAACGTCGTCAACGAGAAGATCTACGTCTTCCTGT 9264 Query 3470 GGTTCTGGTTCTACGTGCTAGCCATCATCA 3499 ||||||||||| | | || | |||| ||| Sbjct 9265 GGTTCTGGTTCGTCATCCTCGGCATCCTCA 9294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12468154666500