Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4466 105 1e-17 >seq4466 Length=93423 Score = 105 bits (116), Expect = 1e-17 Identities = 132/175 (75%), Gaps = 12/175 (7%) Strand=Plus/Minus Query 42416 AAACAT--ACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACC 42473 |||||| |||||||||||| || ||||| |||||||| |||||||||||||||| Sbjct 6740 AAACATGTACTGGCCTTCTTTGCTGCCTCGGACGGCATTGTCAATGAGAACCTGGTGGAA 6681 Query 42474 AGGTTCATGAAAGAGGTGC-AGT-ACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAG 42531 | ||| | || |||| ||| || ||| || | |||||||| ||||||||||| | Sbjct 6680 CGCTTCTCACAGGAAGTGCAAGTGAC--TGAAGCAAGATGCTTCTATGGCTTCCAGATTG 6623 Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACAT 42583 | || ||||| || ||||||||| ||||| | ||||||| |||| ||||| Sbjct 6622 CTATGGAGAATGTACACTCTGAGATGTACTC---TCTGCTCATTGACACATACAT 6571 Score = 100 bits (110), Expect = 5e-16 Identities = 139/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| || || | ||||| || ||||| ||||| | ||| | || ||||| Sbjct 5352 AGGGTCTCCACACCGACTTCGCGTGCCTGATGTTCCGG---CACTTGGTACAGAAGCCGA 5296 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 |||||||| || | |||||||| ||| |||||| |||||| |||||||||||| Sbjct 5295 GCAAGGAGCGCGTACTCAACATCATCAAGGACGCCGTGATCATCGAGCAGGAGTTCCTCA 5236 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCC 43008 || | |||||||||| ||| ||||||||||| ||| || |||| ||| ||||| Sbjct 5235 CGGACGCGCTGCCCGTCAGGCTGCTCGGCATGAACTGCGAACTGATGTCCAACTACATTG 5176 Query 43009 AGTACGTCGCCGAC 43022 ||| || |||||| Sbjct 5175 AGTTTGTTGCCGAC 5162 Score = 91.5 bits (100), Expect = 3e-13 Identities = 156/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| || || || || ||||||| | ||||||||||| |||||||| || | Sbjct 6271 CTGTTCAATGCTATTGAAACCCTGCCCTGTGTAAAGAAGAAGGCTGACTGGGCCCTGCAG 6212 Query 42669 TGGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 ||||||| || | | | || || || | || | | | || ||| | ||||| || Sbjct 6211 TGGATCGCAAG-CAAGTCAGCTACATTTGCAGAACGCATCATCGCATTTGCTGCCGTTGA 6153 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGAT 42787 |||||||| ||||| ||| || ||||| ||||||||| | ||| || | | ||| Sbjct 6152 AGGCATCTTTTTCTCTGGCAGTTTTGCCTCTATCTTCTGGATGAAGAAGCGTGGCTTGAT 6093 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||||||| | || ||| || || || || ||||| |||| Sbjct 6092 GCCCGGATTGACTTTCAGCAATGAGCTGATTTCTAGGGATGAGG 6049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943314839857040