Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq5051 100 2e-16 seq1544 86.0 5e-12 >seq5051 Length=276158 Score = 100 bits (110), Expect = 2e-16 Identities = 82/98 (84%), Gaps = 9/98 (9%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| ||| |||||||||||| ||||||||| |||||||||||| |||| Sbjct 82418 CATGTATTAGCTTTAGAATTACCACAGTTATCCAAATAACTGAGTAAGT-------AACC 82366 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||||||||||||||||||||||| || || | ||||| Sbjct 82365 AAAACTGATATATTGAGCCATTCGCGGCATTGCCTTAA 82328 Score = 100 bits (110), Expect = 2e-16 Identities = 82/98 (84%), Gaps = 9/98 (9%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| ||| |||||||||||| ||||||||| |||||||||||| |||| Sbjct 82418 CATGTATTAGCTTTAGAATTACCACAGTTATCCAAATAACTGAGTAAGT-------AACC 82366 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||||||||||||||||||||||| || || | ||||| Sbjct 82365 AAAACTGATATATTGAGCCATTCGCGGCATTGCCTTAA 82328 >seq1544 Length=14195 Score = 86.0 bits (94), Expect = 5e-12 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || |||| |||| ||||| ||| |||||||| |||||||| || | || || || Sbjct 4637 AGACGCAAGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA-AAGGGTGCG 4695 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || ||||||||||||||||| || ||||| |||||||| || || | || || Sbjct 4696 TCCATCTTCCAATTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCTTC 4755 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCG 34087 |||||| || || ||| | ||| | | |||||| || || ||| | | Sbjct 4756 CTTGTCCTGGATCTTGGCCTTGA-CATTCTCAATAGTATCAGAAGGCTCCACTTCTAGTG 4814 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||||||||| || || |||||||| || || || ||||| Sbjct 4815 TTATTGTTTTGCCTGTCAGTGTTTTTACGAAAATCTGCAT 4854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396642459236758