Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq2172 152 4e-32 seq84480 140 2e-28 seq4167 107 1e-18 >seq2172 Length=16819 Score = 152 bits (168), Expect = 4e-32 Identities = 342/508 (67%), Gaps = 13/508 (3%) Strand=Plus/Minus Query 6510 GGGTTGGCACCTTTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTC 6569 || ||||| || ||||| || || ||||||||||| ||||| || || ||||| |||||| Sbjct 7764 GGATTGGCTCCCTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAGAATTTC 7705 Query 6570 CACGTTTCCAAAAATTCGCGCACACTATCAACAAACGTATTTCGTTTTTCGACGTCGTTT 6629 || || || | || || ||| | || || |||| ||||| |||| | Sbjct 7704 CAGGTCTCGAGGAAGTCCTTCACTGAGGCGACGAAGCGGTTTCTCTTTTCCTTGTCGGTG 7645 Query 6630 AACTGGTAAAACGGATCGCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCT 6689 || | | || |||||| || |||||||| || | || || | || | | ||| Sbjct 7644 AAGAAGAAGAAAGGATCGGCCAGGGTCCATCCACCAACTGAAGGAAGGATCTTCAGGTCT 7585 Query 6690 GGATTGTGGC--GCTTGATCGCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGT 6747 || | | || | || | | ||| ||||| || ||||| || ||||| || ||||| Sbjct 7584 GG--TCTCGCCTGTTTTAACATCATCAACTGGCCGAAGTTGCCCTTGTAAGGCTCGTTCC 7527 Query 6748 AGGCCTCGACACCTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTT 6807 |||| | ||| ||||||||||| ||||| || |||| |||||| || | |||| Sbjct 7526 AGGCAGTCAAACCCTTTTGTGGTTTCTGAAGAGCAGCCCAAGGATCATGGATTGACACTT 7467 Query 6808 TGAAATCTTTTCGGCCGGCGCACGATTTTTGCAACGCCTCAAACGAACTGGGT---ATTT 6864 |||| |||| | ||| ||| |||||||||| | | ||||| | || | Sbjct 7466 TGAAGTCTTCCCTGCCCCTGCATGATTTTTGCAGAATTTGGA---AACTGCCTTCAATCT 7410 Query 6865 GTTGTTTAAGCGCATCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACA 6924 || || |||| ||||| | |||||| || || |||||||| || || ||||| | | Sbjct 7409 GT--TTCAAGC-TGTCGTTGATACCATCTCCACCGCAAATTGGGATGAAACCGTAAAGAA 7353 Query 6925 AATGTGTAAGATTAGGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCC 6984 ||| || |||||||| ||||| | ||| | ||| | | || ||| ||||||| Sbjct 7352 GATGAGTTAGATTAGGGATGGGCACGCGGTCAACTGGAAACTTCCTCAGGTAGACACCCC 7293 Query 6985 ATTCCACAAAGTAAGCGCCCACAACATT 7012 |||| || ||||| || || || || || Sbjct 7292 ATTCGACGAAGTATGCACCAACGACCTT 7265 >seq84480 Length=6514 Score = 140 bits (154), Expect = 2e-28 Identities = 339/508 (67%), Gaps = 13/508 (3%) Strand=Plus/Minus Query 6510 GGGTTGGCACCTTTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTC 6569 |||||||| || ||||| || || ||||||||||| ||||| || || ||||| |||||| Sbjct 5922 GGGTTGGCTCCCTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAGAATTTC 5863 Query 6570 CACGTTTCCAAAAATTCGCGCACACTATCAACAAACGTATTTCGTTTTTCGACGTCGTTT 6629 || || || | || || ||| | || || ||| ||||| |||| | Sbjct 5862 CAGGTCTCGAGGAAGTCCTTCACTGAGGCGACGAAGCGGCTTCTCTTTTCCTTGTCGGTG 5803 Query 6630 AACTGGTAAAACGGATCGCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCT 6689 || | |||| |||||| || |||||||| || | || || | || | | ||| Sbjct 5802 AAGAAGAAAAAGGGATCGGCCAGGGTCCATCCACCAACAGAAGGAAGGATCTTCAGGTCT 5743 Query 6690 GGATTGTGGC--GCTTGATCGCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGT 6747 || | | || | || | | ||| ||||| || ||||| || ||||| || ||||| Sbjct 5742 GG--TCTCGCCTGTTTCAACATCATCAACTGGCCGAAGTTGCCCTTGTAAGGCTCGTTCC 5685 Query 6748 AGGCCTCGACACCTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTT 6807 | | | | ||| || |||||||| ||||| || |||| |||||| |||| |||| Sbjct 5684 ATGAACCCAAACCCTTCTGTGGTTTCTGAAGAGCAGCCCAAGGATCATGGATGGACACTT 5625 Query 6808 TGAAATCTTTTCGGCCGGCGCACGATTTTTGCAACGCCTCAAACGAACTGGGT---ATTT 6864 |||| |||| | |||| ||| ||| |||||| || | | ||||| | || | Sbjct 5624 TGAAGTCTTCCCTGCCGCTGCATGATCTTTGCAGAGCTTGGA---AACTGCCTTCAATCT 5568 Query 6865 GTTGTTTAAGCGCATCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACA 6924 | || || | ||||| | ||||| || || |||||||| || || ||||| | | Sbjct 5567 CT--TTCAAAC-TGTCGTTGATGCCATCTCCACCGCAAATTGGGATGAAACCGTAAAGAA 5511 Query 6925 AATGTGTAAGATTAGGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCC 6984 ||| || ||||| || || || | ||| |||| | | || ||| ||||||| Sbjct 5510 GATGAGTTAGATTGGGGATAGGCACACGGTCAACGGGGAACTTCCTCGGGTAGACACCCC 5451 Query 6985 ATTCCACAAAGTAAGCGCCCACAACATT 7012 |||| || ||||| || || || || || Sbjct 5450 ATTCGACGAAGTATGCACCAACGACCTT 5423 >seq4167 Length=57674 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | |||||| |||| || | || ||| || || ||||| || |||| Sbjct 17783 CCACCTCTGAGACGCAGCACCAGGTGAAGTGTAGATTCCTTCTGGATATTGTAGTCGGAT 17842 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| |||| |||| ||| || ||| | || || || | |||||| || | || Sbjct 17843 AGAGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCGGGAGGA 17902 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| || || ||||| | | | || || | | |||||| Sbjct 17903 ATGCCTTCCTTGTCTTGAATCTTAGCTTTAACATTTTCGATGGTATCAGAGGGTTCCACC 17962 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGT 39721 |||||||| |||||||| ||||| ||||| || |||||||||||||||| Sbjct 17963 TCCAAAGTGATTGTTTTCCCCGTCAAAGTCTTCACGAAGATCTGCATGT 18011 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || || ||||| | ||| ||| || || ||||| ||||||| Sbjct 17327 CCACCACGCAGACGTAGCACTAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCGG-- 17384 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| || || |||| |||| || || ||| | || || | || ||||| || | | Sbjct 17385 AAAGCGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCTGGTG 17444 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | |||||| ||||| ||||| ||||| || | | |||||||| || | Sbjct 17445 GAATGCCTTCCTTGTCTTGGATTTTAGCTTTAACATTCTCGATTGTGTCTGATGGCTCAA 17504 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || ||||| ||||||||||| || || ||||| || ||||| ||||| Sbjct 17505 CTTCTAAAGTTATTGTTTTACCAGTCAATGTTTTGACAAAGATTTGCAT 17553 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| | ||| || || |||||||| || ||| || || ||||| || |||| Sbjct 13906 GCCACCTCTAAGACGAAGGACTAAATGCAACGTAGATTCCTTCTGAATATTGTAGTCGGA 13965 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || |||| |||| ||||||||||| ||| | ||||| || | |||||| || | ||| Sbjct 13966 TAACGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGGG 14025 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| ||||| || | | | | |||||||| || || Sbjct 14026 GATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCGATTGTGTCTGAAGCCTCGAC 14085 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || || || |||| || || |||||||| ||||| Sbjct 14086 CTCTAGTGTAATGGTCTTGCCGGTTAGGGTCTTGACGAAGATTTGCAT 14133 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| | || |||||||| || ||| ||||| ||||| || || | | Sbjct 14363 CCACCACGCAGACGTAAAACTAAATGCAACGTAGATTCCTTTTGAATATTGTAGTCTGAC 14422 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| | || ||||| ||||| ||| | || || || | |||||| || | || Sbjct 14423 AATGTGCGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGG 14482 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| ||||| ||| | | | | |||||| | ||| || Sbjct 14483 ATTCCCTCTTTGTCTTGAATTTTGGCTTTCACATTTTCGATTGTGTCAGAAGCTTCAACT 14542 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || || || | ||| || |||||||| ||||| Sbjct 14543 TCCAAAGTAATGGTCTTTCCAGTCAGAGTCTTGACGAAGATTTGCAT 14589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347002215289307