Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4228 453 1e-122 seq5451 96.9 4e-15 seq4466 87.8 2e-12 >seq4228 Length=62806 Score = 453 bits (502), Expect = 1e-122 Identities = 1126/1715 (66%), Gaps = 26/1715 (2%) Strand=Plus/Minus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || |||||||| | || | ||| || | |||||| || | || ||||| || Sbjct 20098 TTTATCAACAGTAAATTGTATGGCATTCACAGCAGGTTTTGTGCGAAGGTAGTACATTCC 20039 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || || ||||| | ||||| |||||||||| ||| | |||||| || | || Sbjct 20038 TGTTTTCAAACCCATTTTCCATGCATAGAAATGAATAGATGACAATTTACCGTAGTTTGG 19979 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| | || ||| ||||||| || || || ||||| |||||||||||||| || || || Sbjct 19978 TTCAGCAACATGGATATTAAAGGACTGGCTTTGATCGATAAATGCACCTCTGTCGGCAGC 19919 Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212 ||| | || || || | || ||||| || |||||||| | | | | || || Sbjct 19918 CATTTGTATTGTAGTTTTTACAGAAATTTCCCAGACAGTTTTATACAAGTCTCTTATTTC 19859 Query 47213 TTCTGGGA--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgttttttaa 47269 || || | |||| | | ||||||||||||| || | || || ||||| | Sbjct 19858 TTTAGGAATAGATTCAATGCTTTGAATAGATCCATTATTGTGGATTATAAGATTTTTCAT 19799 Query 47270 ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329 || | ||| | | ||||||||| | ||| | ||| |||| || | ||| Sbjct 19798 ATCTTCGTCCCATAAATCAGCTTCAGTTAAATCATGTAACAAGTGATGATTCACCACTTG 19739 Query 47330 AAATTCTCCAGATAGTACTCTACGGCTAT---ATATATTACTTGTATATGGTTCTATAGA 47386 || || || || | || ||| || | |||| || |||| | ||||| | || Sbjct 19738 GAACTCACCCGACAAGAC---ACGTCTTTGGTATATGTTTGATGTAAAAGGTTCAAATGA 19682 Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446 |||||||||||| || || || || || || || || ||||| | ||| | |||| Sbjct 19681 TTCATTATTTCCCAATATCTGTGCTGTGGAAGCAGTTGGCATAGGTGCTAGCAATAGTGA 19622 Query 47447 ATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGA 47506 |||||| | |||| |||| |||| | ||| ||||| | ||||| Sbjct 19621 ATTTCTAAGACCATGTTTTGCAATCTTCTCTTTTAGTGAATCCCAGTCCCACAAATCTGT 19562 Query 47507 TGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATA 47566 ||| ||||| | ||||| || | || |||| ||| || || | ||| Sbjct 19561 TGGGGTCTTGTTCCACATGTCATACTGCAATATACCTTGGCTTGCAGGGCTGCCTTCATA 19502 Query 47567 TGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATA 47626 || | ||| || | | || | |||||| || || |||| ||||| ||| || Sbjct 19501 AGTCTCATATACTCCATGCTTCTCGGCTAATTCACAGCTAGCCTCCAGTGCACCATAGTA 19442 Query 47627 TATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNN 47686 |||||||||||||||| | |||| || | || || |||| | || Sbjct 19441 GATTGTTTCAAATATTTGTTGATTTAATTTTATAGCAGCTTCGCTTTCATATGGTATGCG 19382 Query 47687 NNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTT 47746 || | ||| || ||||||||||| ||||| ||||| ||||| || | | Sbjct 19381 CATTAAAACAAAAGCATCAGCTAATCCTTGAACTCCAATTCCAATGGGTCTGTGCCTCAT 19322 Query 47747 ATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANN 47806 ||| || | || ||||| | ||| || ||| | ||| |||||||| || ||| Sbjct 19321 ATTTGATTTTTTTGCCTCTGGCACTGGGTAAAAGTTCACATCAATAATTTTGTTCAGATT 19262 Query 47807 NNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTAT--TTATA 47864 | |||| | ||||| |||||| | | |||| | || Sbjct 19261 CTCAGTTATAGTTTTAGTGACTTCTTTCAATTTGATAAAATTGTATGTTTTATCATCATT 19202 Query 47865 -ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGT 47923 |||||| |||| | ||| || || |||| ||| || ||||| || |||| || ||| Sbjct 19201 TACAAACATATTTAATGCAATTGAAGCTAAATTGCAGACAGCAACTTCATCTGCTGAAGT 19142 Query 47924 ATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT 47983 ||||| || ||||||| || || || | ||||| || || || | ||| | || || Sbjct 19141 ATATTCTACAATTTCAGTGCAAAGGTTGCTGCATTTAATGGTGCCTAGATTCTTCTGGTT 19082 Query 47984 ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043 | | |||| |||| || || |||||||| | |||||||| ||||| | || | Sbjct 19081 ACTTTTTCTGTTGCATGAATCTTTATAAAGCATGTATGGTGTTCCTGTTTCAACTTGTGC 19022 Query 48044 TTCAATGATAGATTTCCAAACAGTCCTAGC-----CTT-TATAACAGCTCTAGCTTTATT 48097 |||||| |||| |||||| | | | ||| ||| | | ||| | | ||| Sbjct 19021 TTCAATTATAGCTTTCCACAAAACCTGAGCTCGCACTTGTTTTACAAAGCGACCTT---- 18966 Query 48098 ATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC-CCCATACACATTATCTAACC 48156 | ||||| ||||| ||| || |||||||| || ||| ||| || ||| | Sbjct 18965 --CCTGTTCATATTTCTCATACAATGCTTCAAATTCTTCTCCCCAACA-ATCGGATAAAC 18909 Query 48157 CAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAA 48216 |||| || |||| ||||||||| | |||||| | || | ||| ||||| |||||| Sbjct 18908 CAGGGCAATCATGAGGACACATTATACTCCAATCTTGATTACTTTCAACTCTTTTCATAA 18849 Query 48217 ATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCAC 48276 ||| |||||||||||| | || ||| | ||||||| | || |||||| || ||| Sbjct 18848 ATAAATCTGGTATCCATAAGGCATAAAACAGTTCCCTAGCACGTACTTCTTCTTTCCCAG 18789 Query 48277 TATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTG 48336 ||||| |||| | || ||||| || | ||| ||||||||||||||||| |||||||| | Sbjct 18788 TATTCTTTTTCAAATCCAGAAATTCAAATATGTCAGCATGCCATGGTTCCAAATATATGG 18729 Query 48337 CCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAA 48396 | | | | || |||| |||||||||||||||||| | || | || || ||||| |||| Sbjct 18728 CAAATGCGCCAGGTCTTTTATTACCTCCTTGATCGACGTAACGCGCTGTGTTGTTGTAAA 18669 Query 48397 CTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCAC 48456 |||||||||| || |||| |||||| || | |||||| || || | |||||| | || Sbjct 18668 CTCTTAACATCGGCACAAGACCATTCGACACACCATTTGTACCAGCTATATAAGTACCTT 18609 Query 48457 TAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCAC 48516 | | ||| ||| || | || || |||||||| |||||| ||||| |||| Sbjct 18608 TGGATCTAATACAGTGAACATGGAGGCCAATCCCACCTGCTGATTTAGAAATTAGTGCAC 18549 Query 48517 ACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAAC 48576 | |||| || ||||||||||||||||| |||||||||||| |||| || || || | Sbjct 18548 ATTGTTTTAGAGTATCATAAATTCCTTCAATACTATCATCTTTCATGGCTATAAGGAAGC 18489 Query 48577 AACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAA 48636 || ||||| ||| ||| | || ||| || | ||||| |||||| ||| Sbjct 18488 AAGAAGACAGTTGAGGACGTGGGGTCGCTGCTGAGAAAAGAGTTGGGCTTGCATGTGTAA 18429 Query 48637 ACCATTTCTCTGATAACAATTTATATGTTTCAATA 48671 | |||| || |||| || || ||||| | |||| Sbjct 18428 AATATTTTTCAGATAGTAAATTGTATGTGTTAATA 18394 >seq5451 Length=979821 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 136634 ATGACTCCTATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTAAA 136693 ||||||||| | ||||||||||| ||| | || |||| || || | ||| | ||| Sbjct 213646 ATGACTCCTGTGCTACCAATGTTGGCTGAAGCTTGCAAATCAGTGGAAATGGCAATGAAA 213705 Query 136694 AAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTCAC 136753 |||| ||| |||||||| || ||||||||||||||||||| ||| | || || || ||| Sbjct 213706 AAGTGTCCCAATGGAATGTTCTCAGAAATAAAATATGACGGTGAAAGAGTGCAAGTGCAC 213765 Query 136754 AAGAATGGAAA 136764 || || || || Sbjct 213766 AAAAAAGGGAA 213776 >seq4466 Length=93423 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || ||| |||| ||||| || || || || ||||||| || | || | Sbjct 6049 CCTCATCCCTAGAAATCAGCTCATTGCTGAAAGTCAATCCGGGCATCAAGCCACGCTTCT 6108 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| ||||| ||||| ||||| || || || ||||| || || ||||| | Sbjct 6109 TCATCCAGAAGATAGAGGCAAAACTGCCAGAGAAAAAGATGCCTTCAACGGCAGCAAATG 6168 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | | | | |||| || | |||| || | ||||| | ||| ||||| |||| Sbjct 6169 CGATGATGCGTTCTGCAAATGTAGCTGACTTGCTTGCGATCCACTGCAGGGCCCAGTCAG 6228 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 ||||||| |||||||| |||| || || |||| ||| || || Sbjct 6229 CCTTCTTCTTTACACAGGGCAGGGTTTCAATAGCATTGAACAG 6271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561499059505560