Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq4208 176 8e-39 seq4167 158 2e-33 seq1544 123 4e-23 >seq4208 Length=61445 Score = 176 bits (194), Expect = 8e-39 Identities = 110/118 (93%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 263795 GGGAGGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTAACTCCTTGTC 263854 ||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| Sbjct 34976 GGGAGGTCCGTAGCTACTACGTAAGCCGGTGCTGACAAGGAGCCGGTCTAACTCCTTGTC 34917 Query 263855 ATCAGATATGTTGAAGCGTATAAGCAATCATATAATGGTAATATAATATAATAACAAA 263912 ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 34916 ATCAGATATGTTGAAGCGTATAAGCAATCATATAATGGTAA---AATATAATGTCAAA 34862 >seq4167 Length=57674 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || |||||||| | ||||| || | |||||| |||| || || |||||| Sbjct 13897 AATTTGCATGCCACCTCTAAGACGAAGGACTAAATGCAACGTAGATTCCTTCTGAATATT 13956 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||||||||||| | ||| || |||||||| ||||| ||||| || ||||| || Sbjct 13957 GTAGTCGGATAACGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAAATCAACCTCTGCTG 14016 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || ||||| ||||| ||||| ||||||| || | |||| || || || || Sbjct 14017 GTCTGGGGGGATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCGATTGTGTCTGA 14076 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||| || ||||| || || || || || ||||| || || || || |||||||| Sbjct 14077 AGCCTCGACCTCTAGTGTAATGGTCTTGCCGGTTAGGGTCTTGACGAAGATTTGCAT 14133 Score = 147 bits (162), Expect = 4e-30 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | || || | ||| | || | || | ||||| ||||| Sbjct 16862 ATTTGCATACCACCACGCAGACGCAATACTAAGTGAAGCGTTGATTCTTTCTGGATATTG 16921 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||||||||| | ||| || || ||||| ||||| ||||| | || |||||| Sbjct 16922 TAGTCGGATAACGTACGCCCATCTTCCAACTGTTTGCCGGCGAAAATAAGTCGCTGTTGG 16981 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| |||||||| || || || ||||| | ||| | |||| ||| ||||| || Sbjct 16982 TCAGGAGGAATTCCTTCCTTGTCCTGGATTTTTGCTTTGACATTTTCAATTGTATCAGAG 17041 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||||| ||||| || || || || || || || || ||||||||||| Sbjct 17042 GCTTCAACTTCTAGTGTTATGGTCTTGCCAGTCAGAGTCTTGACGAATATTTGCAT 17097 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | || || ||||| | || | || | ||||| || ||| Sbjct 14126 ATTTGCATACCACCACGCAGACGCAGTACTAAGTGGAGAGTGGATTCTTTCTGTATGTTA 14185 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | ||| | | ||| || || ||||| ||||||||||| |||||||| || Sbjct 14186 TAATCTGAGAGCGTACGACCATCTTCCAACTGTTTGCCGGCAAAAATCAATCTCTGCTGG 14245 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || || ||||| ||||| ||||||| ||| | |||| || || || || Sbjct 14246 TCTGGAGGGATCCCCTCTTTGTCTTGGATTTTGGCTTTCACATTTTCGATTGTGTCCGAG 14305 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || |||||||| || || || || || || || ||||| || || |||||||| Sbjct 14306 GCTTCGACTTCTAGTGTAATGGTCTTGCCCGTCAGAGTTTTAACGAAGATTTGCAT 14361 Score = 116 bits (128), Expect = 7e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186 ||| || ||||||||||| | | ||| | ||| | ||||| || || ||||| || Sbjct 13672 TTACATTCCACCTCTCAACCTTAATACTAAATGAAGTGTAGATTCCTTTTGGATATTGTA 13731 Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246 ||||| | || | || || | || || ||||| || || || ||||| || || Sbjct 13732 ATCGGAGAGTGTGCGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTC 13791 Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306 || || || || ||||||||||| ||||||| ||| | ||| || || || |||| Sbjct 13792 TGGTGGGATCCCCTCTTTATCTTGGATTTTGGCTTTCACATTCTCGATTGTGTCTGAAGC 13851 Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||||| || || |||||||| ||||| || || || || |||||||| Sbjct 13852 TTCAACTTCTAATGTGATCGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 13905 Score = 114 bits (126), Expect = 2e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | || || ||||| || | ||||| || || ||||| |||||| Sbjct 17780 ATACCACCTCTGAGACGCAGCACCAGGTGAAGTGTAGATTCCTTCTGGATATTGTAGTCG 17839 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 |||| || | ||| || | ||| |||||||| || || |||||||| || || ||| Sbjct 17840 GATAGAGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCGGGA 17899 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | ||| | |||| || ||||| || | || Sbjct 17900 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTAACATTTTCGATGGTATCAGAGGGTTCC 17959 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || | ||| || ||||| || || | || || || || || ||||| || Sbjct 17960 ACCTCCAAAGTGATTGTTTTCCCCGTCAAAGTCTTCACGAAGATCTGCATGTT 18012 Score = 113 bits (124), Expect = 8e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | || || || || | ||| | |||| || || |||||| Sbjct 17318 ATTTGCATACCACCACGCAGACGTAGCACTAAATGAAGAGTAGATTCCTTCTGAATATTG 17377 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| | ||| | ||| || | || || ||||| || || | || || || Sbjct 17378 TAATCGGAAAGCGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGG 17437 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || ||||| ||||| | ||| | ||| || || || || Sbjct 17438 TCTGGTGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTAACATTCTCGATTGTGTCTGAT 17497 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||||||||||| |||||| |||||||| || | ||||| ||||| ||||||||| Sbjct 17498 GGCTCAACTTCTAAAGTTATTGTTTTACCAGTCAATGTTTTGACAAAGATTTGCATT 17554 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||||||||| || | ||| || | ||||| ||||| || || |||| | Sbjct 17600 ATATTGTAGTCGGATAATGTGCGCCCATCTTCAAGCTGTTTGCCGGCGAAGATCAATCGC 17659 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || || || ||||| || |||||||| || |||| || | |||| ||| || Sbjct 17660 TGCTGGTCTGGGGGGATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATTGTG 17719 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||||| |||||| || | || || ||||| ||||| | ||||| || || || ||| Sbjct 17720 TCGGAAGGCTCAACCTCCAATGTGATGGTTTTGCCTGTCAATGTTTTAACGAAAATCTGC 17779 Query 193359 AT 193360 || Sbjct 17780 AT 17781 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | || || ||||| | || | |||| ||| || || ||| Sbjct 17090 ATTTGCATACCACCACGCAGACGCAGTACTAAGTGAAGAGTAGACTCCTTTTGGATGTTA 17149 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | ||| | | ||| || | ||||| ||||| || || |||||||| || Sbjct 17150 TAATCAGAGAGCGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGG 17209 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || |||||||||||||| || || || ||||| | ||| | |||| ||| || || || Sbjct 17210 TCTGGAGGTATTCCTTCCTTGTCCTGAATTTTCGCTTTAACATTTTCAATTGTGTCAGAG 17269 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || ||||| || || || || || || | || || || || |||||||| Sbjct 17270 GGTTCGACCTCTAGTGTAATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 17325 >seq1544 Length=14195 Score = 123 bits (136), Expect = 4e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || ||||||| || | ||||| || || || || ||||| Sbjct 5081 ATACCACCACGAAGACGCAGTACCAAGTGGAGTGTAGATTCCTTCTGGATGTTGTAGTCA 5140 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | || |||| || ||||| || || || | || ||| ||||| || Sbjct 5141 GACAGTGTGCGGCCGTCTTCTAGCTGCTTTCCAGCGAAGATCAGTCGCTGCTGATCTGGT 5200 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||| | ||||| |||| |||||| || || | |||| Sbjct 5201 GGAATGCCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATAGTGTCTGAGGGCTCA 5260 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| ||||| ||||||||||| || | ||||| || || || |||||| Sbjct 5261 ACTTCAAGAGTGATAGTTTTACCCGTCAAGGTTTTCACGAAAATCTGCATT 5311 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||||||||| || | || | ||| || ||||| || ||||| || || | | | Sbjct 4445 ATATTATAGTCAGAGAGGGTGCGTCCATCTTCCAATTGCTTGCCGGCGAAGATCAGACGC 4504 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || ||||| || || ||||| || ||||| || |||| || | ||| |||||| Sbjct 4505 TGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATAGTG 4564 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||||| || || || || || || || ||||| || | || || || || || ||| Sbjct 4565 TCGGAAGGTTCGACCTCAAGGGTGATGGTCTTACCAGTCAAGGTCTTGACGAAAATCTGC 4624 Query 193359 AT 193360 || Sbjct 4625 AT 4626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898678511135280