Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4167 140 6e-28 seq4140 109 1e-18 seq4134 89.7 1e-12 >seq4167 Length=57674 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | |||||| || | ||||| ||| || ||| ||||||||| Sbjct 17096 ATACCACCACGCAGACGCAGTACTAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCA 17155 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| |||||||| || ||||| |||||||| || || || Sbjct 17156 GAGAGCGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGGTCTGGA 17215 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 ||||||||||| || || || ||||| ||| ||||| || | || || | ||| Sbjct 17216 GGTATTCCTTCCTTGTCCTGAATTTTCGCTTTAACATTTTCAATTGTGTCAGAGGGTTCG 17275 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| |||||||| || ||||| || || || | || || ||||| Sbjct 17276 ACCTCTAGTGTAATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTGCAT 17325 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||| |||||||| | ||||| || || ||||| ||||| Sbjct 17324 ATACCACCACGCAGACGTAGCACTAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCG 17383 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || ||||| || ||||| | || || || || ||| Sbjct 17384 GAAAGCGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCTGGT 17443 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| ||||| || | ||||| | || Sbjct 17444 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTAACATTCTCGATTGTGTCTGATGGCTCA 17503 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||||| ||| || ||||||||||| |||||||| | ||| || |||||| Sbjct 17504 ACTTCTAAAGTTATTGTTTTACCAGTCAATGTTTTGACAAAGATTTGCATT 17554 Score = 132 bits (146), Expect = 9e-26 Identities = 176/243 (72%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 192295 TTTAGTTTAATA-ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGA 192353 ||| |||| || || |||||||| | | |||||||||||| | |||| || || Sbjct 13663 TTTTGTTTCTTACATTCCACCTCTCAACCTTAATACTAAATGAAGTGTAGATTCCTTTTG 13722 Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||| || | ||| ||| | || |||| || || || || ||||| || || Sbjct 13723 GATATTGTAATCGGAGAGTGTGCGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAACCT 13782 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| || || ||||||||||| ||||| ||| ||||| || | Sbjct 13783 CTGCTGGTCTGGTGGGATCCCCTCTTTATCTTGGATTTTGGCTTTCACATTCTCGATTGT 13842 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| | ||| ||||||| || || ||||||||||||| || || | || || || Sbjct 13843 GTCTGAAGCTTCAACTTCTAATGTGATCGTTTTACCAGTTAGGGTCTTGACGAAAATTTG 13902 Query 192534 CAT 192536 ||| Sbjct 13903 CAT 13905 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||||||||| | |||||||| || |||| || || ||||| || || Sbjct 13904 ATGCCACCTCTAAGACGAAGGACTAAATGCAACGTAGATTCCTTCTGAATATTGTAGTCG 13963 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || ||| |||| ||||||||||| || || || || || ||||| || || || Sbjct 13964 GATAACGTGCGTCCATCTTCCAATTGTTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGG 14023 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| ||||| ||||| || ||||| || | ||||| | || Sbjct 14024 GGGATTCCCTCTTTGTCTTGGATTTTGGCCTTCACATTTTCGATTGTGTCTGAAGCCTCG 14083 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| |||||||| || || |||| || || | || || ||||| Sbjct 14084 ACCTCTAGTGTAATGGTCTTGCCGGTTAGGGTCTTGACGAAGATTTGCAT 14133 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | |||||| || | ||||| |||||| || |||||||| Sbjct 16640 ATACCACCACGCAGACGCAGTACTAAGTGAAGAGTAGACTCTTTTTGAATGTTATAATCT 16699 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| |||||||| || || || | ||||| || || || Sbjct 16700 GAGAGCGTGCGACCATCTTCCAGCTGTTTACCGGCGAAAATCAGCCTCTGCTGGTCTGGG 16759 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| ||||| |||||| || ||||| || | || || | || Sbjct 16760 GGGATTCCCTCTTTGTCTTGGATTTTAGCCTTCACATTCTCGATTGTGTCAGAAGGCTCG 16819 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||||||||| || ||||| | || || | || || ||||| Sbjct 16820 ACTTCCAGAGTAATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 16869 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||||||||||| || | |||| || || |||||| || || Sbjct 17552 ATTCCACCACGCAGACGTAATACTAAGTGGAGCGTAGATTCCTTCTGGATATTGTAGTCG 17611 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| || |||| || | ||||| || || ||||| |||| ||| || || || Sbjct 17612 GATAATGTGCGCCCATCTTCAAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGG 17671 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || |||||||| || || || ||||| || | || || | || Sbjct 17672 GGGATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATTGTGTCGGAAGGCTCA 17731 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || |||||||| || || |||||||||| || |||||||| Sbjct 17732 ACCTCCAATGTGATGGTTTTGCCTGTCAATGTTTTAACGAAAATCTGCAT 17781 Score = 114 bits (126), Expect = 3e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | || | |||| || || |||||| || || Sbjct 17780 ATACCACCTCTGAGACGCAGCACCAGGTGAAGTGTAGATTCCTTCTGGATATTGTAGTCG 17839 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| || ||| |||| |||| ||| || || || ||||| |||||||| || || || Sbjct 17840 GATAGAGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCGGGA 17899 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| ||| ||||| || | ||| || | ||| Sbjct 17900 GGAATGCCTTCCTTGTCTTGAATCTTAGCTTTAACATTTTCGATGGTATCAGAGGGTTCC 17959 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || | ||| || ||||| || || || || || | || |||||||| || Sbjct 17960 ACCTCCAAAGTGATTGTTTTCCCCGTCAAAGTCTTCACGAAGATCTGCATGTT 18012 >seq4140 Length=56097 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 |||| |||||||| | | || || || | || | || || ||| || || |||| Sbjct 50448 TACCTCCTCTAAGCCTAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 50389 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | || || |||| ||||| ||||||||||| ||||| | || ||| ||||| |||| Sbjct 50388 AAAGAGTGCGGCCATCCTCCAACTGTTTACCAGCGAAGATAAGTCGCTGCTGATCTGGTG 50329 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||| || || || || || || ||| ||||| |||| ||||| | || | Sbjct 50328 GGATTCCCTCCTTGTCCTGGATCTTTGCTTTGACATTCTCAATAGTGTCTGAAGCCTCCA 50269 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || || || ||||||||||| || | ||||| | || ||||||||| Sbjct 50268 CCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 50219 >seq4134 Length=55171 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 125569 GCCCATTTTTTATGATCTTCGCCTGGATCGTCGCCTTCTTTCCATTGCATTATTTCTACT 125628 |||||| | ||| || | | | ||||||||||||||| ||||| ||| ||||| || Sbjct 48238 GCCCATCGCTGATGGTCCTTGGCAGGATCGTCGCCTTCTACCCATTTCATAATTTCCACC 48179 Query 125629 TTGCAGAAAGCGCATCTTACTTCGTCACCTCTTTGAAGATAATAGAAACCATTTTTAGCC 125688 || ||||| ||||| | ||||||||| || | || ||||| || |||||| || Sbjct 48178 TTACAGAATGCGCAGCGTACTTCGTCTCCACGGCCGAGGTAATAAAATCCATTTCGCGCG 48119 Query 125689 A--ACGTTTCAGGCGAAAGAAACGTTAATGGCCAATTAGTAAATGTTTTTATTCGTTCAC 125746 | ||| || | || || |||| | ||||| || ||| ||||||||||||||| Sbjct 48118 AGCTCGTCTCCG--GATAGGAACGAAACAGGCCATTTTTCAAACGTTTTTATTCGTTCAT 48061 Query 125747 TTTCT 125751 |||| Sbjct 48060 CTTCT 48056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983385400066650