Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4228 205 3e-47 seq5431 114 4e-20 >seq4228 Length=62806 Score = 205 bits (226), Expect = 3e-47 Identities = 735/1133 (65%), Gaps = 21/1133 (2%) Strand=Plus/Minus Query 155313 TCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCA 155372 ||||| || || | || ||||| ||||| || | || ||| | | || |||| | || Sbjct 19458 TCCAGTGCACCATAGTAGATTGTTTCAAATATTTGTTGATTTAATTTTATAGCAGCTTCG 19399 Query 155373 GATGTAAATGCGATATCCATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCG 155432 | | ||| || ||| | ||| | || ||||| || ||||||||||| || Sbjct 19398 CTTTCATATGGTATGCGCATTAAAACAAAAGCATCAGCTAATCCTTGAACTCCAATTCCA 19339 Query 155433 ACTGGGCGATGCCTG-TAATTGCTCCTGCTTGTCTTCTTGTT-TGGGTAAAAATTCACAT 155490 | || | ||||| || ||| | | ||| || || | ||||||||| ||||||| Sbjct 19338 ATGGGTCTGTGCCTCATATTTGATTTTT-TTGCCT-CTGGCACTGGGTAAAAGTTCACAT 19281 Query 155491 CAATAATGTTATTTAAATTTGTAACCAATACCTTG-GTTACGTCTGCTAATTTCACATAG 155549 ||||||| || || | ||| | | ||| || || || ||| ||||| | | | Sbjct 19280 CAATAATTTTGTTCAGATTC-TCAGTTATAGTTTTAGTGACTTCTTTCAATTTGATAAAA 19222 Query 155550 TCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATAGACGCCAGATTACATACC 155609 | |||||||||| ||||||||||||||| | |||| || || | ||| || || Sbjct 19221 TTGTATGTTTTATCATCATTTACAAACATATTTAATGCAATTGAAGCTAAATTGCAGACA 19162 Query 155610 GCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGAT 155668 ||| || | || | | | ||||||||||| ||| ||| ||||| | || || Sbjct 19161 GCAACTTCATCTGCTGAAG-TATATTCTACAATTTCAGTGCAAAGGTTGCTGCATTTAAT 19103 Query 155669 GGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGG 155728 |||||||| ||||||||||||| ||| ||||| || | ||| || || || |||||||| Sbjct 19102 GGTGCCTAGATTCTTCTGGTTACTTTTTCTGTTGCATGAATCTTTATAAAGCATGTATGG 19043 Query 155729 GGTTCCTGTCTCCATCTGTGCGTCCAGAAT--CTTTAGCCAGAGGTCACGGGCATTAATT 155786 |||||||| || | ||||| || | || |||| ||| | | | || | | Sbjct 19042 TGTTCCTGTTTCAACTTGTGCTTCAATTATAGCTTT--CCACAAAACCTGAGCTCGCACT 18985 Query 155787 TGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCG 155846 || || | | |||||| ||||||||| ||||| | | | || || || Sbjct 18984 TGTTTTACAAAGCGACCTTCCTGTTCATATTTCTCATACAATGCTTCAAATTCTTCTCCC 18925 Query 155847 TAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCG 155906 ||||||| | |||||||| | || || || | | |||| || ||||| Sbjct 18924 CAACAATCGGATAAACCAGGGCAATCATGAGGACACATTATACTCCAATCTTGATTACTT 18865 Query 155907 ATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTT 155966 || | | |||||||| ||| ||| | ||||| || || ||||| || | Sbjct 18864 TCAACTCTTTTCATAAATAAATCTGGTATCCATAAGGCATAAAACAGTTCCCTAGCACGT 18805 Query 155967 GACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGT 156026 || || | || |||||| | || | ||||| || |||| ||| | Sbjct 18804 ACTTCTTCTTTCCCAGTATTCTTTTTCAAATCCAGAAATTCAAATATGTCAGCATGCCAT 18745 Query 156027 GGCTCCAGATACATAGCAAAACTACCA---TTCCTCTTGCCACCCTGATCTACATACCGA 156083 || |||| ||| || ||||| ||| | | || || || ||||| || || || Sbjct 18744 GGTTCCAAATATATGGCAAATGCGCCAGGTCTTTTATTACCTCCTTGATCGACGTAACGC 18685 Query 156084 GCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCG 156143 || || || ||| | || | || ||| || | || |||||| || ||||| || || Sbjct 18684 GCTGTGTTGTTGTAAACTCTTAACATCGGCACAAGACCATTCGACACACCATTTGTACCA 18625 Query 156144 CGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT 156203 |||| | ||| || | || | |||| ||| || ||||| ||||||| || Sbjct 18624 GCTATATAAGTACCTTTGGATCTAATACAGTGAACATGGAGGCCAATCCCACCTGCTGAT 18565 Query 156204 TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCC 156263 ||||||||| | || |||| |||| ||||| |||| ||||||||| |||||||| | Sbjct 18564 TTAGAAATTAGTGCACATTGTTTTAGAGTATCATAAATTCCTTCAATACTATCATCTTTC 18505 Query 156264 ATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTA 156323 || | || || |||| ||| | |||||| ||||| || | || ||| || || Sbjct 18504 ATGGCTATAAGGAAGCAAGAAGACAGTTGAGGACGTGGGGTCGCTGCTGAGAAAAGAGTT 18445 Query 156324 GGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAAT--CTTC- 156380 || ||||||| ||||||| || | ||| | ||| |||||| ||||| || | Sbjct 18444 GGGCTTGCATGTGTAAAATATTTTTCAGATAGTAAATTGTATGT---GTTAATAGCTCCG 18388 Query 156381 TCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGG 156433 |||| || || ||||| | || || |||||||| ||| ||||| || Sbjct 18387 TCAATATCTTCACCATGAATGCCAATGGAAACCCTCATGAGCATGTGCTGCGG 18335 >seq5431 Length=832903 Score = 114 bits (126), Expect = 4e-20 Identities = 189/270 (70%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || || ||||| ||||| || ||||| | || ||||| || ||| Sbjct 455637 TCCATAGCCTTTATCAACCGACGTTGAATGTATCCAGTCTCGGCCGTCTTTACGGCAGTA 455578 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 ||||| ||||| ||||||| |||||||| ||||| | | ||| || ||| || || Sbjct 455577 TCAATAAGACCCTCACGACCTCCCATAGCGTGGAAATAAAACTCGGATGG-CGTCAGACC 455519 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 ||| | | ||| | || |||||||| | | |||||| || ||| ||| | || Sbjct 455518 GGCAAGATATGAGTTTTCTACGAAACCTCTGGACTCGGGACCATAATCGTCTTTGATGAA 455459 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 || |||| || || || | ||| |||||||||| || || ||||||||||| || Sbjct 455458 ATGCGGCAATGTTCTTTTACGGAATCCGAATGGGATACGTTTACCTTCAACGTTCTGTTG 455399 Query 302814 TCCCAGGCACGAAATCATCTGCGAAATATT 302843 || | || | ||| | ||| |||||||| Sbjct 455398 ACCTACACAGGCAATAACCTGAGAAATATT 455369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470181150862523