Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1544 116 3e-21 seq4167 111 1e-19 seq4140 87.8 2e-12 >seq1544 Length=14195 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || |||||||| || ||||| |||| Sbjct 3260 CCACCACGGAGACGCAAGACCAAGTGAAGGGTGGATTCCTTTTGGATATTGTAGTCGGAA 3319 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || |||| |||||| || || || || | ||||||||||| | || Sbjct 3320 AGGGTGCGTCCATCTTCCAACTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGG 3379 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| |||||| ||| | | || | | |||||| | ||| ||| Sbjct 3380 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCAATCGTGTCCGAAGGTTCAACC 3439 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || ||||| ||||| ||||| ||||| |||||||| Sbjct 3440 TCGAGGGTGATGGTCTTACCAGTCAAGGTTTTGACAAAAATCTGCAT 3486 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| || | | ||| || | || |||| |||||| || || || Sbjct 3524 TCCTTCTGAATGTTGTAGTCAGAAAGGGTACGACCATCTTCCAACTGCTTGCCGGCGAAG 3583 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | || | || ||||||||| |||||| ||| | | || Sbjct 3584 ATAAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTT 3643 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| | ||| ||||| | ||||| || ||||| ||||| ||||| ||| Sbjct 3644 TCAATCGTGTCCGAAGGTTCAACCTCGAGGGTGATGGTCTTACCAGTCAAGGTTTTGACA 3703 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 3704 AAAATCTGCAT 3714 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | ||| ||||| || |||||||| || | | Sbjct 5084 CCACCACGAAGACGCAGTACCAAGTGGAGTGTAGATTCCTTCTGGATGTTGTAGTCAGAC 5143 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || |||||||| || || || |||| |||||||| || | ||| Sbjct 5144 AGTGTGCGGCCGTCTTCTAGCTGCTTTCCAGCGAAGATCAGTCGCTGCTGATCTGGTGGA 5203 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || || ||||| ||| ||| |||| | | || | | ||||| | || || Sbjct 5204 ATGCCTTCTTTGTCT-TGAATTTTAGCTTTTACATTTTCAATAGTGTCTGAGGGCTCAAC 5262 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | ||||| |||||||||||||| |||||||| || ||||||||| || Sbjct 5263 TTCAAGAGTGATAGTTTTACCCGTCAAGGTTTTCACGAAAATCTGCATTATG 5314 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| |||||||| |||| | ||| || |||| || |||||||| || ||||| Sbjct 2840 TCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCAAGCTGCTTTCCAGCAAAG 2899 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||||||||| | || | || || |||||| |||||| ||| | | || Sbjct 2900 ATCAAACGCTGCTGGTCTGGGGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTTACATTT 2959 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | || ||||| | || || || || || ||||| || || ||| Sbjct 2960 TCAATTGTATCAGAAGGCTCGACCTCGAGGGTAATAGTCTTGCCAGTCAAGGTCTTGACA 3019 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 3020 AAGATCTGCAT 3030 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || |||||||| || ||||| |||| Sbjct 4172 CCACCACGGAGACGCAAGACCAAGTGAAGGGTGGATTCCTTTTGGATATTGTAGTCGGAA 4231 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||| || || || |||| ||||||||||| | || Sbjct 4232 AGCGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGG 4291 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||| ||||| ||| | | | | | ||||| | ||| ||| Sbjct 4292 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATAGTGTCAGAAGGTTCAACC 4351 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || ||||| ||||| ||||| ||||| |||||||| Sbjct 4352 TCGAGGGTGATGGTCTTACCAGTCAAGGTTTTGACAAAGATCTGCAT 4398 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| || | | ||| || | || |||| |||||| || || || Sbjct 3752 TCCTTCTGAATGTTGTAGTCAGAAAGGGTACGACCATCTTCCAACTGCTTGCCGGCGAAG 3811 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||| ||||| | || | || ||||| ||| ||||| ||| | | | Sbjct 3812 ATAAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTATCCTGAATCTTGGCCTTGACATTC 3871 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | ||| ||||| | ||||| || ||||| ||||| ||||| ||| Sbjct 3872 TCAATAGTGTCAGAAGGTTCAACCTCGAGGGTGATGGTCTTACCAGTCAAGGTTTTGACA 3931 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 3932 AAGATCTGCAT 3942 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || |||||||| || || || || | Sbjct 4400 CCACCACGGAGACGCAAGACCAAGTGAAGGGTGGATTCCTTTTGGATATTATAGTCAGAG 4459 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || |||| ||||| || || || |||| ||||||||||| | || Sbjct 4460 AGGGTGCGTCCATCTTCCAATTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGG 4519 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||| ||||| ||| | | | | | |||||| | ||| ||| Sbjct 4520 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCAATAGTGTCGGAAGGTTCGACC 4579 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || ||||| ||||| || || || || |||||||| Sbjct 4580 TCAAGGGTGATGGTCTTACCAGTCAAGGTCTTGACGAAAATCTGCAT 4626 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || ||||| || |||||||| |||| Sbjct 4628 CCACCACGGAGACGCAAGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAA 4687 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || |||| ||||| || || || |||| ||||||||||| | || Sbjct 4688 AGGGTGCGTCCATCTTCCAATTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGGG 4747 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| |||||| ||| | | | | | || || | ||||| Sbjct 4748 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATAGTATCAGAAGGCTCCACT 4807 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || ||||| || |||| ||||| || || |||||||| Sbjct 4808 TCTAGTGTTATTGTTTTGCCTGTCAGTGTTTTTACGAAAATCTGCAT 4854 >seq4167 Length=57674 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | || || || || | |||| ||||| || || ||||| |||| Sbjct 17553 TTCCACCACGCAGACGTAATACTAAGTGGAGCGTAGATTCCTTCTGGATATTGTAGTCGG 17612 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || ||| | || || ||||| || || || || ||||| ||||||||||| | | Sbjct 17613 ATAATGTGCGCCCATCTTCAAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGG 17672 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | | |||||| || |||||| ||| | | || | | |||||| | || | Sbjct 17673 GGATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTTTCAATTGTGTCGGAAGGCTCAA 17732 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 17733 CCTCCAATGTGATGGTTTTGCCTGTCAATGTTTTAACGAAAATCTGCAT 17781 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || || ||||| |||||| ||||||||||| ||||| || | | Sbjct 14363 CCACCACGCAGACGTAAAACTAAATGCAACGTAGATTCCTTTTGAATATTGTAGTCTGAC 14422 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || ||| |||| |||| ||| || || || || ||||| | ||||||||| | ||| Sbjct 14423 AATGTGCGCCCGTCTTCCAACTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGG 14482 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||| |||| | ||| ||| || |||| | || | | ||||| | ||| || Sbjct 14483 ATTCCCTCTTTGT-CTTGAATTTTGGCTTTCACATTTTCGATTGTGTCAGAAGCTTCAAC 14541 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || |||| ||| || || || || ||||| Sbjct 14542 TTCCAAAGTAATGGTCTTTCCAGTCAGAGTCTTGACGAAGATTTGCAT 14589 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || || ||||| |||| | || || | || ||||| ||||| || || || Sbjct 17819 TCCTTCTGGATATTGTAGTCGGATAGAGTGCGTCCATCTTCCAGTTGCTTTCCGGCGAAG 17878 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| | ||||||||| | ||||| || |||||||| ||||| || | | || Sbjct 17879 ATCAATCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTAACATTT 17938 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | ||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 17939 TCGATGGTATCAGAGGGTTCCACCTCCAAAGTGATTGTTTTCCCCGTCAAAGTCTTCACG 17998 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 17999 AAGATCTGCAT 18009 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | ||||| || || ||||| | ||| |||||||| || |||||||||| Sbjct 13677 TTCCACCTCTCAACCTTAATACTAAATGAAGTGTAGATTCCTTTTGGATATTGTAATCGG 13736 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || |||| ||||||||||| || || || ||||||| ||||||||| | | Sbjct 13737 AGAGTGTGCGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGTG 13796 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | | ||| || || ||| ||| || |||| | | | | ||||| | ||| Sbjct 13797 GGATCCCCTCTTTATCTTGGAT-TTTGGCTTTCACATTCTCGATTGTGTCTGAAGCTTCA 13855 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | |||||||||||||| || | || || || || || ||||| Sbjct 13856 ACTTCTAATGTGATCGTTTTACCAGTTAGGGTCTTGACGAAAATTTGCAT 13905 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| ||||| | ||| ||||| ||||| |||||||||| Sbjct 17327 CCACCACGCAGACGTAGCACTAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGAA 17386 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||||||||| || || |||| || |||||||| | ||| Sbjct 17387 AGCGTGCGGCCATCTTCCAGCTGCTTACCGGCGAAGATCAGTCGTTGCTGGTCTGGTGGA 17446 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || |||||||| ||| ||| || || | | | | | ||||| | || || Sbjct 17447 ATGCCTTCCTTGTCTTGGAT-TTTAGCTTTAACATTCTCGATTGTGTCTGATGGCTCAAC 17505 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || | || || |||||||| ||||| ||||| ||||| || ||||||| Sbjct 17506 TTCTAAAGTTATTGTTTTACCAGTCAATGTTTTGACAAAGATTTGCATTC 17555 >seq4140 Length=56097 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | || || | || |||| ||| ||||| || || Sbjct 50410 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCCTCCAACTGTTTACCAGCGAAG 50351 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | |||||||| || | || | | |||||||||| ||||||| || | | | Sbjct 50350 ATAAGTCGCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTTGCTTTGACATTC 50291 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | |||||||| | ||||| ||||||||||| | ||||| || Sbjct 50290 TCAATAGTGTCTGAAGCCTCCACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTTACG 50231 Query 35726 AATATCTGCATTCTGT 35741 || ||||||||| ||| Sbjct 50230 AAGATCTGCATTGTGT 50215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450304607277320