Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1544 89.7 4e-13 seq4167 86.0 4e-12 >seq1544 Length=14195 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | || || ||||| || | ||||| ||||| ||||| ||||| Sbjct 3165 GACAAGGAAGGCATCCCCCCAGACCAGCAGCGTCTTATTTTCGCCGGCAAACAGTTGGAA 3106 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| | | || || ||||||||||||||||| |||| | || ||||| ||| Sbjct 3105 GATGGACGCACCCTTTCTGACTACAACATCCAAAAAGAATCCACTCTCCACTTGGTCTTG 3046 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 3045 CGTCTCCGTGGTGG 3032 >seq4167 Length=57674 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || |||||||| || || || |||||| | || |||||| | | Sbjct 14361 ATGCAAATCTTCGTTAAAACTCTGACGGGCAAGACCATTACACTAGAAGTCGAAGCCTCG 14302 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| || ||| ||||| |||||||| || | || | Sbjct 14301 GAC-----ACAATCGAAAATGTGAAAGCCAAAATCCAAGACAAAGAGGGGATCCCTCCAG 14247 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| | || ||||||||||| ||||| ||||| || | || | | || |||| Sbjct 14246 ACCAGCAGAGATTGATTTTTGCCGGCAAACAGTTGGAAGATGGTCGTACGCTCTCAGATT 14187 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| || ||||| |||| | || || || ||||| ||||||| || Sbjct 14186 ATAACATACAGAAAGAATCCACTCTCCACTTAGTACTGCGTCTGCGTGGTGG 14135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355486033142133