Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mamestra_20configurata_20[genbank_20GCA_5F002192655.1_202017-06-14] 86,779 sequences; 571,307,853 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq4167 107 2e-18 seq1544 107 2e-18 seq4134 86.0 5e-12 >seq4167 Length=57674 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || ||||| || |||| ||||| ||||| || | ||| ||| || Sbjct 17097 ATGCAAATATTCGTCAAGACTCTGACTGGCAAGACCATAACACTAGAAGTTGAAGCCTCT 17038 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| |||||| ||||| ||||| |||| || ||| Sbjct 17037 GATACAATTGAAAATGTCAAAGCAAAAATCCAGGACAAGGAAGGAATTCCTCCTGACCAA 16978 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | ||||||| || |||||||| ||||||||| || | |||| || ||| Sbjct 16977 CAGCGACTTATTTTCGCCGGCAAACAGTTGGAAGATGGGCGTACGTTATCCGACTACAAT 16918 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || || || ||||| ||||||||||| ||||| Sbjct 16917 ATCCAGAAAGAATCAACGCTTCACTTAGTATTGCGTCTGCGTGGTGG 16871 >seq1544 Length=14195 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||||||||| ||||| ||||||||||| ||| ||||| || ||| Sbjct 3258 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAAACCATCACCCTGGAAGTTGAGCCCTCT 3199 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || || ||| ||||| |||||| | ||| || || Sbjct 3198 GATACCATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGCATCCCCCCAGACCAG 3139 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | ||||||| || |||||||| ||||||||| || | | || || || Sbjct 3138 CAGCGTCTTATTTTCGCCGGCAAACAGTTGGAAGATGGACGCACCCTTTCTGACTACAAC 3079 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||||||||| || || || || || |||||||| || ||||| Sbjct 3078 ATCCAAAAAGAATCCACTCTCCACTTGGTCTTGCGTCTCCGTGGTGG 3032 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||||||||| ||||| || || ||||| ||| | || ||||| Sbjct 4398 ATGCAGATCTTTGTCAAAACCTTGACTGGTAAGACCATCACCCTCGAGGTTGAACCTTCT 4339 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | || || || ||| ||||| |||||| | ||| ||| || Sbjct 4338 GACACTATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGCATCCCCCCCGACCAG 4279 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | || || | || ||||| || ||||||||| | || | |||| || ||| Sbjct 4278 CAGCGTCTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACGCTTTCCGACTACAAT 4219 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||| || || || || || |||||||| || ||||| Sbjct 4218 ATCCAAAAGGAATCCACCCTTCACTTGGTCTTGCGTCTCCGTGGTGG 4172 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||||||||| ||||| || || ||||| ||| | || ||||| Sbjct 3486 ATGCAGATTTTTGTCAAAACCTTGACTGGTAAGACCATCACCCTCGAGGTTGAACCTTCG 3427 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | ||||| || || ||||| |||||| | ||| || || Sbjct 3426 GACACGATTGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 3367 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | ||||| | || ||||| || ||||||||| || | |||| || ||| Sbjct 3366 CAGCGTCTTATCTTCGCCGGCAAGCAGTTGGAAGATGGACGCACCCTTTCCGACTACAAT 3307 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||| || || || || || |||||||| || ||||| Sbjct 3306 ATCCAAAAGGAATCCACCCTTCACTTGGTCTTGCGTCTCCGTGGTGG 3260 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| ||||| || ||||| || || ||||| ||| | || ||||| | Sbjct 4626 ATGCAGATTTTCGTCAAGACCTTGACTGGTAAGACCATCACCCTTGAGGTCGAACCTTCC 4567 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | || || || ||| ||||| |||||| | ||| || || Sbjct 4566 GACACTATTGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGCATCCCCCCTGACCAG 4507 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | || || | || ||||| |||||||||||| || | | || |||||| Sbjct 4506 CAGCGTCTGATCTTCGCCGGCAAGCAATTGGAAGATGGACGCACCCTCTCTGACTATAAT 4447 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||| || || || || || |||||||| || ||||| Sbjct 4446 ATCCAAAAGGAATCCACCCTTCACTTGGTCTTGCGTCTCCGTGGTGG 4400 >seq4134 Length=55171 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 104762 GACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAAATAATGCGCTGGTTGGAGGGCGACGAC 104821 |||||||| |||||||| ||||| || |||||||| ||| ||| | || |||||||| Sbjct 48153 GACGAAGTACGCTGCGCATTCTGTAAGGTGGAAATTATGAAATGGGTAGAAGGCGACGAT 48212 Query 104822 CCGGCCGTAGATCATAAACGATGGGCGCCACAGTGCCCGTTTTTGCGAAA 104871 || ||| || ||| | ||||||||||| || ||||| || | ||||| Sbjct 48213 CCTGCCAAGGACCATCAGCGATGGGCGCCGCAATGCCCATTCGTCCGAAA 48262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421365084434104