Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq616 549 2e-151 seq200 95.1 1e-14 >seq616 Length=113079 Score = 549 bits (608), Expect = 2e-151 Identities = 1219/1806 (67%), Gaps = 52/1806 (3%) Strand=Plus/Plus Query 52786 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCG---GATGCGGGTTTCGTACG 52842 ||| | |||| ||||| | || ||||| || |||| | ||| ||||| ||||| Sbjct 35120 TTTAACTTTAGATTTGTCTACAGTAAATTGTAT---AGCGTTTGCTGCAGGTTTAGTACG 35176 Query 52843 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAG 52902 |||||| |||||||| ||||| | ||| | |||| |||||||| ||| ||||| Sbjct 35177 TAGATAATACATTCCTGTTTTCAAACCCATTTTCCAGGAATAAAAATGAATAGAAGTTAG 35236 Query 52903 TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGC 52962 || |||| | || ||||| | ||| || || | ||||| |||||||| || || || Sbjct 35237 CTTCCCATAATTAGGTTCTGCAACATGAATGTTGAATGATTGGCTTTGATCTATAAATGC 35296 Query 52963 TCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 53022 |||||||||||| ||||||| || | ||||| | ||||||||||| |||||| || Sbjct 35297 TCCCCTGTCTGCTGCCATTTGAATAGTGGTCTTAACAGAAATTTCCCAAACAGTTTTGTA 35356 Query 53023 -AACTCGCTTAATATCTTCTGGAAGGTT---TGTATTCT--GAATAGATCCACCATCTAC 53076 || || || ||| |||| |||| || | || || | || || ||| | Sbjct 35357 CAAATCTCT-AATTTCTTTAGGAA--TTACCTCAATGCTTTGTATGGAGCCATTGTTGTG 35413 Query 53077 CATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAG 53136 || || || || || || |||| ||| |||| || || | | | | | || Sbjct 35414 GATGATAAGGTTTTTCATGTCTTCATCCCACAATTCAGCTTCTGTGAGATCACGTAATAG 35473 Query 53137 ATGCGGATTAACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACT 53193 ||| ||||||| ||||||||||| || || | || |||| || || ||||| Sbjct 35474 ATGGTGATTAACAACTTGAAATTCACCTGATAGAACGCGTCTCTGA---TATATATTGGA 35530 Query 53194 GGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 53253 ||| ||||| | ||||||||||| || | ||||||||| || ||||| || ||||| Sbjct 35531 GGTTATGGGTTCAAATGACTCATTATTGCCAAGAATTTGAGCTGTAGATGCTGTGGGCAT 35590 Query 53254 AGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGT 53311 || || || || | |||||||| || ||||| || ||||| ||||| | | Sbjct 35591 GGGAGCTACTAAAAGTGAGTTTCTAAGGCC--ATGTTTTGCAATTTTTTCTTTCAAGGCA 35648 Query 53312 TCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTA 53371 ||| | ||| | | | || ||||| ||| || | Sbjct 35649 GTCCAGTCCCACAAGTTAGTTGGAGTCTTATTCCACATATCGTATTGTAAAATTCCTTGG 35708 Query 53372 CTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACT 53430 || || | || ||| |||| || || || ||| | || || |||| || ||| || Sbjct 35709 CTCGCCGGACTG-CCTTCATAAGTTTCATAGACTCCATATTTTTCGGCTAATTGACAGCT 35767 Query 53431 CGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCT-- 53488 || || | ||| ||||||||||| ||||| || || | | |||||| | | || Sbjct 35768 TGCTTCAAGTGCTCCGTAATAAATTGTTTCAAATATTTGTTGATTTAGCTTTATGGCCGG 35827 Query 53489 TCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCA 53548 | || ||||| ||||| | | |||||||| | ||||||||||||||| || || Sbjct 35828 TTCA--CTATCGTATGGAATACGCATAAGAATAAATGTGTCTGCTAATCCTTGCACTCCT 35885 Query 53549 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 53608 ||||| || ||||| |||||| |||| || ||| |||||| |||| || ||||||||| Sbjct 35886 ATACCAATTGGTCTGTGTCTCATATTGGATGTTTTAGCTTCAGGAACTGGGTAATAATTA 35945 Query 53609 ATATCTATAATTTTATTGAGGTTTCTGACA-ATTACTTTGACCACATCCTTCAGTTTGAG 53667 | || ||||||||||| || || ||| || | ||| || || || ||||| Sbjct 35946 ACTTCAATAATTTTATTAAGATT-CTGTGTTATGATTTTTGTAACTTCTTTTAGTTTATC 36004 Query 53668 AAAATCAAATTGTCCATCT--ATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACA 53724 ||||| || | |||| ||| ||||||||||| | ||||||||| |||| ||| || Sbjct 36005 AAAATTGTATGTTTTATCTTCATTGACAAACATGTTAAGTGCAATAGAGGCCAAATTGCA 36064 Query 53725 AACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 53784 ||| || ||||||| ||| | || | | ||| ||||| || | ||| || ||||| Sbjct 36065 AACAGCAACCTCATCAGCTGAAGTGTACTCCACTATTTCAGTACACAAATTGCTGCACTT 36124 Query 53785 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 53844 || ||||||| ||||| ||| ||||| || ||| |||| || ||||| | || | Sbjct 36125 AATAGTTCCTAGATTTTTTTGGTTACTTTTGCGGTTGCACGAGTCTTTATACAACATATA 36184 Query 53845 TGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTAT 53904 ||| || || ||||| | || | ||||||||| |||||||| | | ||| ||||| Sbjct 36185 TGGTGTTCCCGTTTCTACTTGTGCTTCTATAATAGCTTTCCACAGAGCCTGAG-CTTTA- 36242 Query 53905 TATAGATT--TGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCT 53962 | | || ||| |||||| |||| ||| | || | | ||||| || ||| Sbjct 36243 ACTTGCTTAACAAATCGATTTTCTTTTTCATATTTCTTGTATAGTGCCTCAAATTCTTCT 36302 Query 53963 CCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 54022 |||||| || | || || ||||| |||| |||||||| | ||| | | | | | Sbjct 36303 CCCCAACAATCTGCTAAGCCTGGACAGTCATGAGGACACATAAGACTCCAATTTTCATTA 36362 Query 54023 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 54082 || |||| ||||||||| | |||||| ||||| | ||| ||| || ||||| | | Sbjct 36363 CTCTCTACTCTTTTCATAAATAAATCAGGTATCCATAAAGCATAAAAGAGTTCTCTAGCT 36422 Query 54083 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 54142 | ||| || || || ||||| ||||| ||||| | ||| | | |||||| | |||| Sbjct 36423 CGTACTTCTTCTTTGCCAGTATTTTTTTTCAGATCTAAGAATTCGAAAATATCTGCATGC 36482 Query 54143 CACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTAT 54202 || ||||||||||||| | | | ||||||| ||||| || || || ||||||| ||| Sbjct 36483 CATGGTTCCAAGTATACTGCAAAAGCTCCAGGACGTTTATTGCCCCCTTGATCTACATAT 36542 Query 54203 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTC 54262 || || || || ||||| |||| |||||| || | || |||||||| ||||||| || Sbjct 36543 CTGGCAGTATTGTTATACACTCGCAACATAGGGACAAGGCCATTGGAGACACCATTTGTT 36602 Query 54263 CCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTG---ATAGA--CCTATCCCCC 54317 || | ||||| | || |||| | ||| | || || || || || || | Sbjct 36603 CCAGCAATATAAGTGCCTTTGGC-----TCTTATGCAGTGAACATGGACTCCAATACCTC 36657 Query 54318 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 54377 | || |||||| ||||| || ||| | ||||| || ||||| ||||| || ||||||| Sbjct 36658 CAGCAGATTTAGATATTAAAGCACATTGCTTTAATGTGTCATATATGCCTTCAATACTAT 36717 Query 54378 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 54437 ||||| |||| || || || || ||| | || | || ||| | || || Sbjct 36718 CATCCTTCATTGCAACTAAGAAGCATGAAGATAGCTGTGGTCGTGGCGTTGCTGCTGAAA 36777 Query 54438 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAG 54497 |||| || || || || ||||| ||||||| || |||| ||| || || || || | Sbjct 36778 ATAATGTCGGGCTGGCATGGGTAAAATATTTTTCCGACAGTAAATTATATGTATCAATTG 36837 Query 54498 CTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGT 54556 | | || ||||| || | || ||||||| | |||||||| | |||||| || || Sbjct 36838 CAGCATCAATATCTTCACCG-TGTATTCCTATAGACACACGCATCAGCATGTGTTGTGGC 36896 Query 54557 CTTTCA 54562 | |||| Sbjct 36897 CGTTCA 36902 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 |||||||||||| |||| |||||| ||| |||||||||||||||||||| ||||| || Sbjct 36990 CTTGTTGTTTATCTTCAACAAGTATGATCGCTCCAAAGTTTTAAAACCAAAGTAGTTATA 37049 Query 54628 TGAAAAGTCTCGTTCGTAAATAATA 54652 | ||| |||| || || | |||| Sbjct 37050 TTTAAAATCTCTGTCATACACAATA 37074 Score = 82.4 bits (90), Expect = 9e-11 Identities = 100/135 (74%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 54772 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 54831 |||| |||||||||||||||| || | || |||| || | |||||| ||||| | || Sbjct 37747 AAAT-GTTTTTTTGTTTCTTTATGCAAGTTGGATATAGCCAATCTAGCCGCTAGCACAGC 37805 Query 54832 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTC 54891 |||||| ||||| | |||||| || ||||| |||| || | || | || | ||| Sbjct 37806 ATAATCAGGATGGTCTGTAGTCATTGTAGCTGCAGTTTCAGCGGCCAAGTTATCAAGTTC 37865 Query 54892 TACCGTTGTTACTCC 54906 || ||||||||||| Sbjct 37866 AACTGTTGTTACTCC 37880 >seq200 Length=575180 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 ||||| || || || | || || ||||| ||||| |||||||||||||| || ||||| Sbjct 474171 TACATCTCTGAGTGCACATTCTCCATGGCTATTTGGAATCCGTAGAAACACCTTGCCTCC 474112 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 || | || |||||| | |||| || | | ||||||||| || || |||||| Sbjct 474111 GTCACTTGCACTTCTTGCGAGAATCTCTCAACAAGATTTTCATTGACAATACCGTCAGAT 474052 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 24587 || ||||| || |||| |||||| || || |||| | | ||| Sbjct 474051 GCAGCAAAGAATGCCAGTACATGCTTGATGAAATGTCTCTCG 474010 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || |||| ||| ||||| ||||| ||||| || || || || |||||||| ||||| | | Sbjct 473531 TTTGATAGATCAACTTCCTCCACGGTCCAGAAAGAAGCTTCGGCCTTTTTGTACATCTCC 473472 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || || ||| | |||||||| || ||||||||||| Sbjct 473471 CAAATATCAGGGTATTGAATGGGGAAAATAACAAA 473437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593566705456080