Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq44 197 1e-45 seq116 116 3e-21 seq36 104 2e-17 >seq44 Length=1464967 Score = 197 bits (218), Expect = 1e-45 Identities = 638/976 (65%), Gaps = 21/976 (2%) Strand=Plus/Minus Query 6369 CAATCTCCCTGTAGTCCACCACACCCTCCTCCCAAGTGCCTTTCACTTTACCCGTCGCCA 6428 |||||||||||||||| ||||| || |||| |||||| ||||| || || || | Sbjct 1427369 CAATCTCCCTGTAGTCGACCACTCCGTCCTGCCAAGTACCTTTAACAGGGCCATCAGCTA 1427310 Query 6429 CCCCACTAAACAGATTGTTGTTCGTGTAATTCGTCACACCCGACCACCCCCTGCCGTACA 6488 | || | || | | | || | |||| | || || | ||| || | ||||||| Sbjct 1427309 CTCCTGTGAAGGGGATATCGTCCTTGTAGTCATGGACTCCAGTCCATCCACGACCGTACA 1427250 Query 6489 TAGCCACCCCCACCACCAACTTGCCACTGTTCACACTCTGGTTCAACAAACGCCTCAACG 6548 |||| || || || |||| ||| | ||| | ||| ||| | | ||| | Sbjct 1427249 TAGCAACACCGACGACCAGCTTCTTGGGCTGCACTCCCTGAGCCAAAAGATACCTAATAC 1427190 Query 6549 CAAAGTCTGTGGTGTAGTTTTCGTGGGTTTTCCACGACGGTGGATACA--GAGGTGCGTG 6606 ||||||| || ||||| | || | || ||||||| || | || | ||||| || Sbjct 1427189 CAAAGTCAGTAGTGTAAGTCTCCTTGGGTTTCCACTCAGGAGCGTATAACGAGGTC--TG 1427132 Query 6607 GTAGCCCAGATCCGTCATCG-ACCACGCACCCTTGTAATCGTAGTTCATCACGAAAATGT 6665 || ||| ||| ||||| | |||| || |||||| | |||||| ||||||||||||| | Sbjct 1427131 GTGGCCAAGAGT-GTCATTGGACCAGGCTCCCTTGAAGTCGTAGCTCATCACGAAAATAT 1427073 Query 6666 AGTCGAGATACTGTTGGCACTGTTTGTAGTCGACCACGTCTATCTTGTCGTAACCACCGC 6725 ||| | || | ||| | ||||||| ||| || | |||||||| | ||| | | Sbjct 1427072 GGTCCATGTAGTTCTGGGCTTCCTTGTAGTTGACAACCTGAATCTTGTCCCACCCAGCAC 1427013 Query 6726 TGATGGCGCTCGTCAACTGCAATCTCCGGCCCGTCTTCTCCTCCAGCTCGTCCAACATTT 6785 ||||||| |||| || || || || |||| | | |||||||||||| | Sbjct 1427012 TGATGGCAGAAGTCAGCTCGTATTTCTTTCCGGTCTCAGCGGATAACTCGTCCAACATGT 1426953 Query 6786 GTCTCAAATCGCTCAGCAGCTGTACATAGGTGTACTTGTCGGT-GTCAGCATCGCCCAAC 6844 |||| | || ||| || ||| | || || || | | | || | | || | Sbjct 1426952 GTCTAAGCTCCTTCATGAG-TGT---CACGTATATTTCACCATCTTTAGGACCACCAAGG 1426897 Query 6845 TTGTCGTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAAC 6904 | ||| |||||||| ||||| || |||||||| |||||||| || || ||||| || Sbjct 1426896 TCAGGGTTAGCTCCCTTACCTCCAGGGAACTCCCAATCAATATCAACGCCATCGAAGAAT 1426837 Query 6905 TTCCACGTCTCCAGAAACTCGCGCACGCTCTGCACAAAC-ACCCG---ACGCTTGGCGGA 6960 ||||| |||| | ||| || | | ||| || ||| | || | ||| | Sbjct 1426836 TTCCAGGTCTGTAAAAAGTC---CTTG-ACTGAACCAACGAAGCGGTCTCTCTTAACTTT 1426781 Query 6961 GTCGTGCATCTTGTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGT 7020 ||| | | | ||||||| || || ||||| || || | || || || || | Sbjct 1426780 GTCATCGAAGAAGAAGAAGGGATCAGCCAGGGTCCAACCACCGACTGAAGGAAGAATCTT 1426721 Query 7021 CAGATTGGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTC 7080 ||| | || ||| ||||| | |||||| || || ||||| ||||| || ||||| Sbjct 1426720 CAGGTCAGGTTTGGCCTGTTTCAACATCATCAGTTGACCGAAATTGCCCTTGTAAGGCTC 1426661 Query 7081 GTCGTACGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACT 7140 | | | | | ||||| ||||| || || | || |||| |||||| || Sbjct 1426660 ATTCCAGGACGATAAGCCCTTCTGTGGCTTTTGCAAAGCAGCCCAAGGATCGTGGATGGA 1426601 Query 7141 CACTTTGAAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTT-CAAACGACCCCGGCA 7199 |||||||| || || || || ||| || | ||||| |||| |||| | ||| | Sbjct 1426600 TACTTTGAAGTCTTCCCGACCGCTGCAGGAGCGTTGCAGTGCTTGGAAACTA-CCCTCAA 1426542 Query 7200 CCTGTTTCAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCA 7259 | ||||| |||||| | || || || |||||||| || | || ||||||| | Sbjct 1426541 TTTCCTTCAAACTGTCGTTAATGCCATCACCGCCGCAAATCGGGATGAAGCCGTACAATA 1426482 Query 7260 AATGGCTGAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCC 7319 | ||| | || ||||| ||||| || |||||| |||| |||| || |||||| |||| Sbjct 1426481 AGTGGGTCAGGTTGGGAACGGGAACTTTGTCTACGGGGAACTTTCGCGGGTACACGCCCC 1426422 Query 7320 ACTCCACAAAGTACGC 7335 | || || |||||||| Sbjct 1426421 ATTCTACGAAGTACGC 1426406 >seq116 Length=882076 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 13218 TGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACACT 13277 ||||| ||||| ||| || | ||| ||| | | ||||| || || || |||||||| Sbjct 457893 TGGCCGCGTTGCATGCGCCAAAAACCAGAGGAACTCGCGGAAGCAGGATTTTTCTACACC 457952 Query 13278 GGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGCCG 13337 ||| | || || || || || || |||||||| || || || | ||||||||||| Sbjct 457953 GGCCAAGGGGATAAAACGAAATGTTTCTATTGCGATGGAGGTCTCAAAGATTGGGAAAAC 458012 Query 13338 GAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGCTA 13397 || ||||| || ||||||||||||| | |||||||| ||||| || || || || || Sbjct 458013 GACGATGTTCCATGGGAACAGCATGCCCGTTGGTTCGATCGTTGTGCGTATGTGCAACTT 458072 Query 13398 GTCAAGGGTAGAGACTACGTACAGAAAGTCATCACGGAAGCCTGCGT 13444 || || || | || || || |||| || | ||||||| || || Sbjct 458073 GTTAAAGGCCGTGATTATGTCCAGAGGGTATTATCGGAAGCGTGTGT 458119 >seq36 Length=1647457 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | | ||| | ||| || ||||| ||| ||| |||||||||||||| || | Sbjct 937291 CCACCGCGGAGTCTGAGTACTAAATGCAGAGTGGACTCTTTCTGAATGTTGTAATCTGAC 937350 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| || || ||||||||||| || || | ||||| || || ||||| Sbjct 937351 AGAGTGCGGCCGTCCTCAAGCTGTTTTCCGGCAAAGATAAGTCGCTGCTGATCTGGAGGA 937410 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| ||||| ||||| | | | ||||| ||||| Sbjct 937411 ATGCCTTCCTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCCGATGGTTCCACT 937470 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || ||||| ||||| ||||| ||||| |||||||| Sbjct 937471 TCCAGTGTGATTGTTTTGCCAGTCAGCGTCTTGACAAAAATTTGCAT 937517 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || ||| | || || Sbjct 456263 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 456204 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || ||||| ||||| ||||| ||||| || || | || || ||||| Sbjct 456203 AGCTGTTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGG 456144 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | |||| | ||| || || | ||||| || ||| Sbjct 456143 ATCTTTGCCTTTACATTCTCAATGGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTTTG 456084 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| |||||||| ||||| Sbjct 456083 CCAGTAAGGGTCTTGACAAAGATCTGCAT 456055 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||||||||| ||| ||||| ||||||||||| || || ||| | || || Sbjct 455583 TACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCCTC 455524 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || ||||| ||||| || ||||| ||||| ||||| || || | || || ||||| Sbjct 455523 AAGCTGTTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTG 455464 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || ||| |||||| | | | |||| | ||| ||||| | ||| || || || Sbjct 455463 GATCTTTGCCTTAACATTCTCGATAGTGTCTGAAGGCTCAACCTCAAGGGTGATGGTTTT 455404 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || |||||||| ||||| Sbjct 455403 ACCTGTGAGGGTTTTGACAAAGATCTGCAT 455374 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||||||||| ||| ||||| ||||||||||| || || ||| | || || Sbjct 455811 TACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCCTC 455752 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || ||||| |||||||| ||||| ||||| ||||| || || | ||||||||||| Sbjct 455751 GAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTG 455692 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| || | | | |||| ||||| |||| ||||| || || Sbjct 455691 GATCTTAGCCTTTACATTCTCAATAGTGTCAGATGGTTCCACTTCCAGTGTAATAGTTTT 455632 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| || || ||||| ||||| Sbjct 455631 TCCAGTGAGAGTTTTAACGAAGATCTGCAT 455602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394974706573291