Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq44 221 9e-53 seq116 123 2e-23 seq36 98.7 8e-16 >seq44 Length=1464967 Score = 221 bits (244), Expect = 9e-53 Identities = 524/788 (66%), Gaps = 9/788 (1%) Strand=Plus/Minus Query 91168 GTGGTGTACAACTCGTTCGGGTTCCATTGCGGGGCGTATAGTGTCGTTTGATAGCCCAAA 91227 || ||||| ||| || || ||||| | || ||||||| | || || | ||| | | Sbjct 1427181 GTAGTGTAAGTCTCCTTGGGTTTCCACTCAGGAGCGTATAACGAGGTCTGGTGGCCAAGA 1427122 Query 91228 TCGGTATTTGACCAAGCTCCTTTAAAATCGTAAGTCATGACATATATTTTACTCAAAAAC 91287 | ||| ||||| ||||| || || ||||| |||| || | || | || | Sbjct 1427121 GTGTCATTGGACCAGGCTCCCTTGAAGTCGTAGCTCATCACGAAAATATGGTCCATGTAG 1427062 Query 91288 TTTTGTGCAGCGTCATAATCGACAAGTTCGATCTTGTCATAACCGGCACCGATTGCGCTT 91347 || || || | | || | ||||| | |||||||| | || |||| ||| || Sbjct 1427061 TTCTGGGCTTCCTTGTAGTTGACAACCTGAATCTTGTCCCACCCAGCACTGATGGCAGAA 1427002 Query 91348 GTCAATTCGTACACTTTACCTGTTTGTGCTTGCAAATCATCCAACATGTCACGCAACTCT 91407 |||| ||||| || || || | || || || |||||||||| | | ||| Sbjct 1427001 GTCAGCTCGTATTTCTTTCCGGTCTCAGCGGATAACTCGTCCAACATGTGTCTAAGCTCC 1426942 Query 91408 TTTAGCAAAACAATGTATGTAGCAGCGTCGCGTTTCGGATCGCCAATGGCCGGATTAGCG 91467 || | | | |||| | || | || ||| ||| | |||| | | || ||||| Sbjct 1426941 TTCATGAGTGTCACGTATATTTCACCATC---TTTAGGACCACCAAGGTCAGGGTTAGCT 1426885 Query 91468 CCTTTACCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAAACTTGC 91527 || ||||| || || || |||||||||||||| || || || || |||||||| || Sbjct 1426884 CCCTTACCTCCAGGGAACTCCCAATCAATATCAACGCCATCGAAGAATTTCCAGGTCTGT 1426825 Query 91528 AAAAATTCTTTAACCGAATCAACGAACACGTTTCTTCG---TTTGACATCGTGCATAAAA 91584 ||||| || || || ||| ||||||| || ||| |||| ||||| | || | Sbjct 1426824 AAAAAGTCCTTGACTGAACCAACGAAGCGGTCTCTCTTAACTTTGTCATCGA--AGAAGA 1426767 Query 91585 TAGAACGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAAATGCGGGTTG 91644 |||| || || | || ||||| ||||||| || || | || || | | || ||| Sbjct 1426766 -AGAAGGGATCAGCCAGGGTCCAACCACCGACTGAAGGAAGAATCTTCAGGTCAGGTTTG 1426708 Query 91645 GCCAACTTGGCGGCCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTCCAAGCGGAT 91704 ||| || ||| | ||||| || ||||||||||||||||| ||||| | ||| Sbjct 1426707 GCCTGTTTCAACATCATCAGTTGACCGAAATTGCCCTTGTAAGGCTCATTCCAGGACGAT 1426648 Query 91705 ACACCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAACTTTAAAATCA 91764 | || || ||||| ||||| | || ||||| |||||||| ||||| ||||| || || Sbjct 1426647 AAGCCCTTCTGTGGCTTTTGCAAAGCAGCCCAAGGATCGTGGATGGATACTTTGAAGTCT 1426588 Query 91765 TCGCGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGTTTTGAGGGCA 91824 || || || |||| || ||||||| || |||||||| ||| || | Sbjct 1426587 TCCCGACCGCTGCAGGAGCGTTGCAGTGCTTGGAAACTACCCTCAATTTCCTTCAAACTG 1426528 Query 91825 TCGTTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATGGGACAAATTT 91884 ||||| | ||||| || |||||||| || || || |||||||| | |||| || || Sbjct 1426527 TCGTTAATGCCATCACCGCCGCAAATCGGGATGAAGCCGTACAATAAGTGGGTCAGGTTG 1426468 Query 91885 GGCAGCGGCACCTTGTCGATTGGAAAGTTGCGTCCGTACACGCCCCATTCAACAAAGTAC 91944 || | || || ||||| | || || || || ||||||||||||||| || |||||| Sbjct 1426467 GGAACGGGAACTTTGTCTACGGGGAACTTTCGCGGGTACACGCCCCATTCTACGAAGTAC 1426408 Query 91945 GCGGCGAC 91952 || |||| Sbjct 1426407 GCACCGAC 1426400 >seq116 Length=882076 Score = 123 bits (136), Expect = 2e-23 Identities = 156/213 (73%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 20105 TGCACATAATCACGCCCTTTGACAAGCAGCAAGTATCCACAGTTACTAAACCAACGTGCG 20164 || ||||||||||| ||||| ||||| ||| || |||| | |||||||| || Sbjct 458095 TGGACATAATCACGGCCTTTAACAAGTTGCACATACGCACAACGATCGAACCAACGGGCA 458036 Query 20165 TGTTGTTCCCATGGAATGTCATCATTTTCCCAATCTTTAAGGCCGCCATTGCAATAAAAA 20224 || ||||||||||||| || || |||||||||||||| || || |||| |||||| ||| Sbjct 458035 TGCTGTTCCCATGGAACATCGTCGTTTTCCCAATCTTTGAGACCTCCATCGCAATAGAAA 457976 Query 20225 CACAAAGTTTTATCACCGCGCGACGTATAATAAAATCCCGCTTCGGCCAATTCATCGGGC 20284 || |||||||| || | || || ||||||| ||||| || | ||| || || Sbjct 457975 CATTTCGTTTTATCCCCTTGGCCGGTGTAGAAAAATCCTGCTTCCGCGAGTTCCTCTGGT 457916 Query 20285 CTTTGCTTCATGCTGCGCGGCC-ACCCTTCAAA 20316 |||| ||||| ||||||| | |||| ||| Sbjct 457915 TTTTGGCGCATGCAACGCGGCCAATCCTTGAAA 457883 Score = 113 bits (124), Expect = 3e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 20402 TTGCGTATTAAAGGACAATGCGGTGCCCATTTTTGGTGATCTTTCGCCGGGTCGTCGCCT 20461 || |||| || ||||| || || |||||| || |||||||||||| |||||||| ||| Sbjct 457738 TTACGTAAAAACGGACATTGGGGCGCCCATCGTTTGTGATCTTTCGCAGGGTCGTCTCCT 457679 Query 20462 TCTTGCCAATGCATAATTTCCACTTTGCAAAACGCACAGCGCACTTCGTCAGCGCGCCCC 20521 || ||| |||||||||| ||||| || || |||||||| ||||| ||| ||||||| Sbjct 457678 TCCGCCCATCGCATAATTTCTACTTTACAGAATGCACAGCGAACTTCATCACCGCGCCCA 457619 Query 20522 AAATAATAGAACCCGTT 20538 | || ||||| || || Sbjct 457618 AGGTAGTAGAAACCATT 457602 >seq36 Length=1647457 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| ||||| || || || ||||| || || | | || | ||| Sbjct 455129 AGCACCAGGTGAAGAGTTGACTCCTTCTGGATGTTATAATCTGAGAGGGTGCGGCCGTCT 455070 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || ||||| || || ||| |||| |||| || ||||| ||| | ||||||||||| Sbjct 455069 TCTAATTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGAATACCTTCCTTATCT 455010 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || ||||| | ||| |||||| ||||| ||| | |||||| | Sbjct 455009 TGAATTT-TAGCTTTGACGTTCTCAATAGTGTCTGACGGCTCAACTTCGAGAGTGATGGT 454951 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||| || ||||| |||||||| ||||| ||||| || Sbjct 454950 TTTACCAGTCAAGGTTTTTACGAAAATCTGCATCTT 454915 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || ||||| ||||| | || || || || ||||| ||||||||||| || | Sbjct 937290 TCCACCGCGGAGTCTGAGTACTAAATGCAGAGTGGACTCTTTCTGAATGTTGTAATCTGA 937349 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | || || | ||||| || ||| ||||||||| || ||||| || Sbjct 937350 CAGAGTGCGGCCGTCCTCAAGCTGTTTTCCGGCAAAGATAAGTCGCTGCTGATCTGGAGG 937409 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||||||| |||| | || || || | ||| ||||| || || Sbjct 937410 AATGCCTTCCTTATCCTGGATTT-TAGCTTTAACATTCTCAATTGTGTCCGATGGTTCCA 937468 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| ||||||| |||| || || |||||||||||||| Sbjct 937469 CTTCCAGTGTGATTGTTTTGCCAGTCAGCGTCTTGACAAAAATTTGCAT 937517 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||||||| ||||| || |||||||||||||| | | || | |||| Sbjct 937534 AGCACCAAGTGAAGTGTGGATTCCTTCTGAATGTTGTAGTCTGATAGAGTGCGCCCATCT 937593 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || || || || || ||| | || || | || ||||| || | |||||| || || Sbjct 937594 TCTAACTGCTTTCCGGCAAAAATGAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCT 937653 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| ||| || | | ||| |||||| ||||| ||| | ||||| || Sbjct 937654 TGGATTTTGGCCTTCACATTTTCAATAGTGTCTGAAGGCTCAACTTCCAAAGTGATAGTT 937713 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || || || || || ||||| || || |||||||| Sbjct 937714 TTCCCAGTTAAAGTCTTTACGAAGATCTGCATTTT 937748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379247508044895