Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq44 221 1e-52 >seq44 Length=1464967 Score = 221 bits (244), Expect = 1e-52 Identities = 647/982 (66%), Gaps = 25/982 (3%) Strand=Plus/Minus Query 35873 TTAGCAATCTGTCTGTAGTCGACCACGCCGTTTTCCCATGTACCCGTGATCGGTCCGACG 35932 || ||||||| |||||||||||||| |||| | ||| ||||| | | || || | Sbjct 1427373 TTGGCAATCTCCCTGTAGTCGACCACTCCGTCCTGCCAAGTACCTTTAACAGGGCCATCA 1427314 Query 35933 GCTACGCCACTGAATGGATTGTCACTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCG 35992 ||||| || |||| || | || ||||||| ||||| || ||||| || || ||| Sbjct 1427313 GCTACTCCTGTGAAGGGGATATCGTCCTTGTAGTCATGGACTCCAGTCCATCCACGACCG 1427254 Query 35993 TACATTGCTACGCCCAACACGAGtttttttGGATTCACTCGTTGCGCGAGCAAAGCGTCC 36052 ||||| || || || | || || || || || | ||||| || || | |||| || Sbjct 1427253 TACATAGCAACACCGACGACCAGCTTCTTGGGCTGCACTCCCTGAGCCA--AAAGATACC 1427196 Query 36053 --ACGGCCACGTTGGCGGTGTACGGTTCGTTAGGTTTCCACGCGGAACCGTACAGTGCCG 36110 | | | || | ||||| | || || ||||||||| | | | |||| | | | Sbjct 1427195 TAATACCAAAGTCAGTAGTGTAAGTCTCCTTGGGTTTCCACTCAGGAGCGTATAACGAGG 1427136 Query 36111 TCTGATGACCGAGATCGGTATTAGACCAAGCTCCTTTGAAATCATAACTCATCACGAAAA 36170 |||| || || ||| | ||| ||||| ||||| ||||| || || ||||||||||||| Sbjct 1427135 TCTGGTGGCCAAGAGTGTCATTGGACCAGGCTCCCTTGAAGTCGTAGCTCATCACGAAAA 1427076 Query 36171 TTTTATCTAAATACTGTTGTGCTCGGTCGTAATTAACCGCGGCGATCTTGTCTATGCCAG 36230 | | || | || | || ||| | ||| || || | |||||||| |||| Sbjct 1427075 TATGGTCCATGTAGTTCTGGGCTTCCTTGTAGTTGACAACCTGAATCTTGTCCCACCCAG 1427016 Query 36231 CGCTAATCGCTGTGGTGAGTTCTAAAGTACGATTCGTTTGTATTTGA--ACTTGATCGAG 36288 | || || || | || || || | | | | || | | || ||| | || | Sbjct 1427015 CACTGATGGCAGAAGTCAGCTCGTATTT-CTTTCCGGTCTCAGCGGATAACTCG-TCCAA 1426958 Query 36289 CATGGCGCGCAATTCGCCCAATAAAGCGATATACGTGTTATTGTCGCGTTCCACAT---C 36345 |||| | | || | | | | | |||| | ||| || | || | | Sbjct 1426957 CATGTGTCTAA----GCTCCTTCATGAGTGTCACGTAT-ATT-TCACCATCTTTAGGACC 1426904 Query 36346 GCCAACGTTTGGATTGGCGCCTTTGCCGCCCGGAAATTCCCAATCAATATCGATGCCGTC 36405 |||| || || || || || || || || || || |||||||||||||| | ||| || Sbjct 1426903 ACCAAGGTCAGGGTTAGCTCCCTTACCTCCAGGGAACTCCCAATCAATATCAACGCCATC 1426844 Query 36406 GAAAAATTTCCATGTCAACACAAATTCACGCACGGATTCGACAAAAATTTGTCGCGT--- 36462 ||| |||||||| ||| | ||| || || || | || || | || | | Sbjct 1426843 GAAGAATTTCCAGGTCTGTAAAAAGTCCTTGACTGAACCAACGAAGCGGTCTCTCTTAAC 1426784 Query 36463 TCGCGCATCGTGCATATGATAGAAGGGATCGGACAGTGTCCAACCGCCGATTGATGCCAA 36522 | ||||| | | || |||||||||| | ||| |||||||| |||| ||| | | Sbjct 1426783 TTTGTCATCGA--AGAAGA-AGAAGGGATCAGCCAGGGTCCAACCACCGACTGAAGGAAG 1426727 Query 36523 CACTTTTAGATTGGGATTGGCCAATTTTGCTGCCATTAATTGACCAAAATTGCCTTTGTA 36582 | || || | || |||||| ||| ||| | |||||| |||||||| ||||| Sbjct 1426726 AATCTTCAGGTCAGGTTTGGCCTGTTTCAACATCATCAGTTGACCGAAATTGCCCTTGTA 1426667 Query 36583 GGGTTCGTTCCATG-CGCTAACGCCTGTTTGTGGTTTTTGGAGCGCCGCCCACGGATCGT 36641 || || ||||| | || ||| ||| | ||||| ||||| | || ||||| ||||||| Sbjct 1426666 AGGCTCATTCCAGGACGATAAGCCCT-TCTGTGGCTTTTGCAAAGCAGCCCAAGGATCGT 1426608 Query 36642 GTATGGAAACTTTAAAATTGTCCCTGCCAGCGCACGATCTTTGCAACGCTTCAAAACTCC 36701 | ||||| ||||| || | |||| || ||| || | ||||| |||| ||||| | Sbjct 1426607 GGATGGATACTTTGAAGTCTTCCCGACCGCTGCAGGAGCGTTGCAGTGCTTGGAAACTAC 1426548 Query 36702 CCGTGATAGATTTTAAACTGTCGTTTATACCGTCACCGCCGCAAATCGGTATAAATCCGT 36761 || || || ||||||||||| || || ||||||||||||||||| || || |||| Sbjct 1426547 CCTCAATTTCCTTCAAACTGTCGTTAATGCCATCACCGCCGCAAATCGGGATGAAGCCGT 1426488 Query 36762 ATAAAATGTGCGAAAGGTTCGGCGTGGGCACTTTGTCCACGGGAAAAGATCGACCGTAAA 36821 | || | ||| | ||||| || ||| |||||||| ||||| || ||| ||| | Sbjct 1426487 ACAATAAGTGGGTCAGGTTGGGAACGGGAACTTTGTCTACGGGGAACTTTCGCGGGTACA 1426428 Query 36822 CGCCCCATTCGACAAAATAGGC 36843 |||||||||| || || || || Sbjct 1426427 CGCCCCATTCTACGAAGTACGC 1426406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418197597972320