Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq616 545 3e-150 seq1214 118 1e-21 seq200 89.7 6e-13 >seq616 Length=113079 Score = 545 bits (604), Expect = 3e-150 Identities = 1225/1813 (68%), Gaps = 58/1813 (3%) Strand=Plus/Plus Query 62024 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCG---GATGCGGGTTTCGTACG 62080 ||| | |||| ||||| | || ||||| || |||| | ||| ||||| ||||| Sbjct 35120 TTTAACTTTAGATTTGTCTACAGTAAATTGTAT---AGCGTTTGCTGCAGGTTTAGTACG 35176 Query 62081 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 62140 |||||| |||||||| ||||| | ||| | |||| |||||||| ||| ||||| Sbjct 35177 TAGATAATACATTCCTGTTTTCAAACCCATTTTCCAGGAATAAAAATGAATAGAAGTTAG 35236 Query 62141 TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGC 62200 || |||| | || ||||| | ||| || || | ||||| |||||||| || || || Sbjct 35237 CTTCCCATAATTAGGTTCTGCAACATGAATGTTGAATGATTGGCTTTGATCTATAAATGC 35296 Query 62201 TCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA 62260 |||||||||||| ||||||| || | ||||| | ||||||||||| |||||| || Sbjct 35297 TCCCCTGTCTGCTGCCATTTGAATAGTGGTCTTAACAGAAATTTCCCAAACAGTTTTGTA 35356 Query 62261 -AACTCGCTTAATATCTTCTGGAAGGTT---TGTATTCT--GAATGGATCCACCATCTAC 62314 || || || ||| |||| |||| || | || || | ||||| ||| | Sbjct 35357 CAAATCTCT-AATTTCTTTAGGAA--TTACCTCAATGCTTTGTATGGAGCCATTGTTGTG 35413 Query 62315 CATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAG 62374 || || || || || || |||| ||| |||| || || | | | | | || Sbjct 35414 GATGATAAGGTTTTTCATGTCTTCATCCCACAATTCAGCTTCTGTGAGATCACGTAATAG 35473 Query 62375 ATGCGGGTTAACTACTTGGAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACT 62431 ||| | ||||| ||||| ||||| || || | || |||| || || ||||| Sbjct 35474 ATGGTGATTAACAACTTGAAATTCACCTGATAGAACGCGTCTCTGA---TATATATTGGA 35530 Query 62432 GGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 62491 ||| ||||| | ||||||||||| || | ||||||||| || ||||| || ||||| Sbjct 35531 GGTTATGGGTTCAAATGACTCATTATTGCCAAGAATTTGAGCTGTAGATGCTGTGGGCAT 35590 Query 62492 AGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTA--GAT 62547 || || || || | |||||||| || ||||| || ||||| ||||| | | Sbjct 35591 GGGAGCTACTAAAAGTGAGTTTCTAAGGCC--ATGTTTTGCAATTTTTTCTTTCAAGGCA 35648 Query 62548 GTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGT 62607 || ||| | ||| | | | || | ||||||| ||| || | Sbjct 35649 GT--CCAGTCCCACAAGTTAGTTGGAGTCTTATTCCACATATCGTATTGTAAAATTCCTT 35706 Query 62608 TACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAA 62666 || || | || ||| |||| || ||||| ||| | || || |||| || ||| Sbjct 35707 GGCTCGCCGGACTG-CCTTCATAAGTTTCATAGACTCCATATTTTTCGGCTAATTGACAG 35765 Query 62667 CTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCT 62726 || || || | ||| ||||||||||| |||||||| || | | |||||| | || || Sbjct 35766 CTTGCTTCAAGTGCTCCGTAATAAATTGTTTCAAATATTTGTTGATTTAGCT-TTATGG- 35823 Query 62727 TCCGGG---CTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACA 62783 |||| ||||| ||||| | | |||||||| | ||| ||||||||||| || Sbjct 35824 -CCGGTTCACTATCGTATGGAATACGCATAAGAATAAATGTGTCTGCTAATCCTTGCACT 35882 Query 62784 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 62843 || ||||| || ||||| |||||| |||| || ||| |||||| |||| || |||||| Sbjct 35883 CCTATACCAATTGGTCTGTGTCTCATATTGGATGTTTTAGCTTCAGGAACTGGGTAATAA 35942 Query 62844 TTAATATCTATAATTTTATTGAGATTTCTGACA-ATTACTTTGACCACATCCTTCAGTTT 62902 |||| || ||||||||||| ||||| ||| || | ||| || || || ||||| Sbjct 35943 TTAACTTCAATAATTTTATTAAGATT-CTGTGTTATGATTTTTGTAACTTCTTTTAGTTT 36001 Query 62903 GAGAAAATCAAATCGCCCATCT--ATT-ACAAACATGTTCAATGCAACAGATGCCAGATT 62959 ||||| || |||| ||| ||||||||||| | ||||| ||| |||| ||| Sbjct 36002 ATCAAAATTGTATGTTTTATCTTCATTGACAAACATGTTAAGTGCAATAGAGGCCAAATT 36061 Query 62960 ACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACA 63019 || || || ||||||| ||| | || | | ||| ||||| || | ||| || || Sbjct 36062 GCAAACAGCAACCTCATCAGCTGAAGTGTACTCCACTATTTCAGTACACAAATTGCTGCA 36121 Query 63020 CTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 63079 ||| |||||||||| ||||| ||| ||||| || ||| |||| || ||||| | || Sbjct 36122 CTTAATAGTTCCTAGATTTTTTTGGTTACTTTTGCGGTTGCACGAGTCTTTATACAACAT 36181 Query 63080 GAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTT 63139 |||| || || ||||| | || | ||||||||| |||||||| | | ||| ||| Sbjct 36182 ATATGGTGTTCCCGTTTCTACTTGTGCTTCTATAATAGCTTTCCACAGAGCCTGAG-CTT 36240 Query 63140 TATTATAGATT--TGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCG 63197 || | | || ||| ||||| |||| ||| | || | | || || || Sbjct 36241 TA-ACTTGCTTAACAAATCGATTTTCTTTTTCATATTTCTTGTATAGTGCCTCAAATTCT 36299 Query 63198 TCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63257 ||||||||| || | || | ||||| |||| |||||||| | ||| | | | Sbjct 36300 TCTCCCCAACAATCTGCTAAGCCTGGACAGTCATGAGGACACATAAGACTCCAATTTTCA 36359 Query 63258 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTT 63317 | | || |||| ||||||||| | |||||| ||||| | ||| ||| || ||||| Sbjct 36360 TTACTCTCTACTCTTTTCATAAATAAATCAGGTATCCATAAAGCATAAAAGAGTTCTCTA 36419 Query 63318 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63377 | || ||| || || || ||||| ||||| ||||| | ||| | | |||||| | | Sbjct 36420 GCTCGTACTTCTTCTTTGCCAGTATTTTTTTTCAGATCTAAGAATTCGAAAATATCTGCA 36479 Query 63378 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63437 ||||| ||||||||||||| || | | ||||||| ||||| || || || ||||||| Sbjct 36480 TGCCATGGTTCCAAGTATACTGCAAAAGCTCCAGGACGTTTATTGCCCCCTTGATCTACA 36539 Query 63438 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTG 63497 ||||| || || || ||||| |||| |||||| || | || || || || | |||||| Sbjct 36540 TATCTGGCAGTATTGTTATACACTCGCAACATAGGGACAAGGCCATTGGAGACACCATTT 36599 Query 63498 GTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTG---ATAGA--CCTATTC 63552 || || | ||||| || |||| | ||| | || || || || || | Sbjct 36600 GTTCCAGCAATATAAGTGCCTTTGGC-----TCTTATGCAGTGAACATGGACTCCAATAC 36654 Query 63553 CCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGC 63612 | || || |||||| ||||| || ||| | ||||| |||||||| |||||||| || | Sbjct 36655 CTCCAGCAGATTTAGATATTAAAGCACATTGCTTTAATGTGTCATATATGCCTTCAATAC 36714 Query 63613 TATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCAT 63672 ||||||| |||| || || || || ||| | || | || | ||| | || Sbjct 36715 TATCATCCTTCATTGCAACTAAGAAGCATGAAGATAGCTGTGGTCGTGGCGTTGCTGCTG 36774 Query 63673 TAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA 63732 |||||| || || || || ||||| ||||||| || |||| ||| || || |||| Sbjct 36775 AAAATAATGTCGGGCTGGCATGGGTAAAATATTTTTCCGACAGTAAATTATATGTATCAA 36834 Query 63733 TAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63791 | || | || ||||| || | || ||||||| | |||||||| | |||||| || Sbjct 36835 TTGCAGCATCAATATCTTCACCG-TGTATTCCTATAGACACACGCATCAGCATGTGTTGT 36893 Query 63792 GGTCTTTCAACAA 63804 || | |||| ||| Sbjct 36894 GGCCGTTCAGCAA 36906 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 ||||||||||| ||||||||||| ||| |||||||||||||||||||| ||||| ||| Sbjct 36991 TTGTTGTTTATCTTCAACAAGTATGATCGCTCCAAAGTTTTAAAACCAAAGTAGTTATAT 37050 Query 63867 GAAAAGTCTCGTTCGTAAATAATAACCGAAT 63897 ||| |||| || || | |||| | |||| Sbjct 37051 TTAAAATCTCTGTCATACACAATAGCAGAAT 37081 Score = 82.4 bits (90), Expect = 1e-10 Identities = 100/135 (74%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 64010 AAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGC 64069 |||| ||||||||||||| || || | || ||||| || | ||| || ||||| | || Sbjct 37747 AAAT-GTTTTTTTGTTTCTTTATGCAAGTTGGATATAGCCAATCTAGCCGCTAGCACAGC 37805 Query 64070 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 64129 |||||| ||||| | |||||| || ||||| |||| || |||| | || | ||| Sbjct 37806 ATAATCAGGATGGTCTGTAGTCATTGTAGCTGCAGTTTCAGCGGCCAAGTTATCAAGTTC 37865 Query 64130 TACCGTTGTTACTCC 64144 || ||||||||||| Sbjct 37866 AACTGTTGTTACTCC 37880 >seq1214 Length=30633 Score = 118 bits (130), Expect = 1e-21 Identities = 257/380 (68%), Gaps = 11/380 (3%) Strand=Plus/Plus Query 155252 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTT 155309 |||||||||| |||| |||||||| || ||| |||| | ||||| | | ||| | Sbjct 14255 TTATGACTCCCGTATTA--CCCATGTTGGCTGAAGCATGCAAGTCTGTAGAAATGGCAAT 14312 Query 155310 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 155369 || |||| |||| || ||||| | ||| |||| || || || |||||||||||||| Sbjct 14313 GAAGAAATGTCCAAACGGCATGTTCTCTGAAATCAAGTATGACGGAGAAAGAGTACAAGT 14372 Query 155370 TCATaaaaaaaaTAACGAGTTTGCATTCTTTAGT--AGAAACATGAAACCAGTACTCTCT 155427 ||||||||| || || ||| || ||| | || | |||||||| | || Sbjct 14373 ACATAAAAAAGGAAATGAATTTAAAT--ATTACTCAAGGGCTTTAAAACCAGTGATGGCT 14430 Query 155428 CATAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATC 155487 ||||||||| || || | || ||||| |||| ||||||||| | ||| | | | Sbjct 14431 CATAAAGTGAATCATTTTAAGGAATATTTACCCAAAGCATTTCCACAAGGAAATGATCTG 14490 Query 155488 GTATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGGA 155544 | |||||| | || | | | || || | ||| || ||| |||||||||| Sbjct 14491 ATTTTGGATGCAGAGGTATTAATGGTTGATGTTAATACTGGGAAACCATTACCGTTTGGC 14550 Query 155545 AGTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTT 155604 | || ||||| ||||| | ||||| |||| | | | ||| |||| |||||| Sbjct 14551 ACATTGGGTATTCACAAGCAATCAGAATTTAAAGATGCGTCTGTCTGTCTGTTTGTGTTT 14610 Query 155605 GACTGTTTATACTTTGATGG 155624 ||||| ||||||| | |||| Sbjct 14611 GACTGCTTATACTATAATGG 14630 >seq200 Length=575180 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 ||||| || || || | || || ||||| || || |||||||||||||| || ||||| Sbjct 474171 TACATCTCTGAGTGCACATTCTCCATGGCTATTTGGAATCCGTAGAAACACCTTGCCTCC 474112 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 || | ||||||||| | |||| || | | ||||||||| || || || ||| Sbjct 474111 GTCACTTGCACTTCTTGCGAGAATCTCTCAACAAGATTTTCATTGACAATACCGTCAGAT 474052 Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 34034 || ||||| || |||| |||||| || || |||| | | ||| Sbjct 474051 GCAGCAAAGAATGCCAGTACATGCTTGATGAAATGTCTCTCG 474010 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || |||| ||| ||||| ||||| ||||| || || || || |||||||| ||||| | | Sbjct 473531 TTTGATAGATCAACTTCCTCCACGGTCCAGAAAGAAGCTTCGGCCTTTTTGTACATCTCC 473472 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 || || ||| | ||||| || |||||||||||||| Sbjct 473471 CAAATATCAGGGTATTGAATGGGGAAAATAACAAA 473437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629653288460880