Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq36 129 6e-25 seq616 98.7 1e-15 >seq36 Length=1647457 Score = 129 bits (142), Expect = 6e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | ||||| || | ||||| || ||||| || || || ||| Sbjct 935535 GCCGCCGCGAAGTCGTAGTACTAAATGCAAAGTAGATTCCTTTTGGATATTGTAGTCGGA 935594 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||| |||||||| ||||| ||| |||| || || |||||||| ||||| Sbjct 935595 GAGAGTACGGCCGTCCTCGAGCTGCTTACCGGCAAAGATAAGTCGCTGCTGATCCGGAGG 935654 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 |||||||| ||||| ||| |||| | ||| | | || | |||||| | ||||||| Sbjct 935655 AATGCCTTCCTTGTCC-TGAATTTTGGCCTTAACATTCTCAATTGTGTCAGAAGGCTCCA 935713 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | |||| || | ||| || ||||||| ||| || ||||||||||||||| Sbjct 935714 CTTCAAGTGTGATCGTTTTACCGGTCAGCGTCTTAACGAATATTTGCATA 935763 Score = 98.7 bits (108), Expect = 1e-15 Identities = 167/236 (71%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || ||||| || || ||||||||||| Sbjct 455144 CCACCGCGCAGACGGAGCACCAGGTGAAGAGTTGACTCCTTCTGGATGTTATAATCTGAG 455085 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | || || |||||| ||||||| || |||||||| || || Sbjct 455084 AGGGTGCGGCCGTCTTCTAATTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGA 455025 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCA 139715 || ||||| || || ||| |||| | ||| | |||| || | ||||| | ||||| | Sbjct 455024 ATACCTTCCTTATCT-TGAATTTTAGCTTTGAC-GTTCTCAATAGTGTCTGACGGCTCAA 454967 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTAT 139771 | || | || | || || || ||||| ||||||||||| || ||||| ||||| Sbjct 454966 CTTCGAGAGTGATGGTTTTACCAGTCAAGGTTTTTACGAAAATCTGCAT--CTTAT 454913 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || || || || |||||||| || || | |||| | ||||| Sbjct 937537 ACCAAGTGAAGTGTGGATTCCTTCTGAATGTTGTAGTCTGATAGAGTGCGCCCATCTTCT 937596 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||| || || ||| | || ||||| |||||||| ||||| |||||||||||||| | Sbjct 937597 AACTGCTTTCCGGCAAAAATGAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGG 937656 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 ||||| || | | ||| | ||||| | ||||| || || | || | || || Sbjct 937657 ATTTTGGCCTTCACATTTTCAATAGTGTCTGAAGGCTCAACTTCCAAAGTGATAGTTTTC 937716 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || |||||||| || ||||| Sbjct 937717 CCAGTTAAAGTCTTTACGAAGATCTGCAT 937745 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || || || ||||||||||| ||||| Sbjct 455600 CCACCACGCAGACGAAGTACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAA 455541 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || |||||||| || ||| |||||| || ||||| || || || Sbjct 455540 AGGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGA 455481 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| ||| || | | || | ||||| | ||||| ||| Sbjct 455480 ATGCCTTCTTTGTCTTGGATCTTTGCCTTAACATTCTCGATAGTGTCTGAAGGCTCAACC 455421 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | || || || || | ||||| || || || |||||| Sbjct 455420 TCAAGGGTGATGGTTTTACCTGTGAGGGTTTTGACAAAGATCTGCATA 455373 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| |||||||| || || ||||| || ||| Sbjct 456281 CCACCGCGAAGACGAAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 456222 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || ||||||||||| ||||| |||||| || ||||| || || || Sbjct 456221 AGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGA 456162 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| ||| |||| | || | ||||| | ||||| || Sbjct 456161 ATGCCTTCTTTGTCTTGGATCTTTGCCTTTACATTCTCAATGGTGTCAGAAGGCTCAACT 456102 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | || ||||| || | || || || || || |||||| Sbjct 456101 TCAAGAGTAATAGTTTTGCCAGTAAGGGTCTTGACAAAGATCTGCATA 456054 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || ||||| || || ||||| || ||| Sbjct 455372 CCACCACGAAGACGGAGCACCAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAA 455313 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || |||||||| || || |||||| ||| || || || || || Sbjct 455312 AGGGTACGGCCATCCTCAAGCTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGA 455253 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || |||| | ||| | ||||| | ||||| ||| Sbjct 455252 ATGCCTTCTTTGTCTTGGATCTTGGCCTTTACATTTTCAATAGTGTCTGAAGGCTCAACC 455193 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | || ||||| || | || || || || || |||||| Sbjct 455192 TCAAGGGTGATTGTTTTGCCAGTAAGGGTCTTGACAAAGATCTGCATA 455145 >seq616 Length=113079 Score = 98.7 bits (108), Expect = 1e-15 Identities = 473/746 (63%), Gaps = 17/746 (2%) Strand=Plus/Plus Query 153072 TTGACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTACTGTGAAACGGT 153131 || |||||||||||||| || || | || |||||| | | | ||| | | ||| Sbjct 35481 TTAACAACTTGAAATTCACCTGATAGAACGCGTCTCTGATATATATTGGAGGTTATGGGT 35540 Query 153132 TCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACA 153191 ||||| ||||| || || || ||||| || || | || || |||||| || || Sbjct 35541 TCAAATGACTCATTATTGCCAAGAATTTGAGCTGTAGATGCTGTGGGCATGGGAGCTACT 35600 Query 153192 AGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCCCAT 153251 | | || || | | || |||||| || || ||||| | ||||||||| Sbjct 35601 AAAAGTGAGTTTCTAAGGCCATGTTTTGCAATTTTTTCTTTCAAGGCAGTCCAGTCCCAC 35660 Query 153252 AACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCTA 153311 || ||| || || |||||||| ||||||||| || || |||||||| || || Sbjct 35661 AAGTTAGTTGGAGTCTTATTCCACATATCGTATTGTAAAATTCCTTGGCTCGCCGGACTG 35720 Query 153312 CCGGCAAACGTGCTATACGGCTCACTGTCAGACGCCAGTTTCAAA-CTGGCATCGAGCGC 153370 || || | || ||| | ||| | | || | || | | || || || || || Sbjct 35721 CCTTCATAAGTTTCATA-GACTCCATATTTTTCGGCTAATTGACAGCTTGCTTCAAGTGC 35779 Query 153371 GGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTA 153430 | | ||| | ||||| | || |||| || || | ||| | || || |||| Sbjct 35780 TCCGTAATAAATTGTTTCAAATATTTGTTGATTTAGCTTTATGGCCGGTTCACTATCGTA 35839 Query 153431 CGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACG 153490 || || |||| | | ||||| || || || ||||| | || || || || || | Sbjct 35840 TGGAATACGCATAAGAATAAATGTGTCTGCTAATCCTTGCACTCCTATACCAATTGGTCT 35899 Query 153491 ATGGCGCATATTAGAtttttttGCAGCTTCA---ACAGGATAGAAATTGCGGTCGATAAT 153547 || | |||||| ||| |||| ||||||| || || || |||| || ||||| Sbjct 35900 GTGTCTCATATTGGATGTTTT---AGCTTCAGGAACTGGGTAATAATTAACTTCAATAAT 35956 Query 153548 TTTATTTAAACTAA---TCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAA 153604 |||||| | | | | | || | | | || | | | | ||||| | Sbjct 35957 TTTATTAAGATTCTGTGTTATGATTTTTGTAACTTCT---TTTAGTTTATCAAAATTGTA 36013 Query 153605 CGTTCCATT---AATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGT 153661 ||| || | ||| | | |||| | ||||| || ||||| |||||||| ||| Sbjct 36014 TGTTTTATCTTCATTGACAAACATGTTAAGTGCAATAGAGGCCAAATTGCAAACAGCAAC 36073 Query 153662 TTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCC 153721 || || | | || | |||||||| | ||||||||||||||| || || || Sbjct 36074 CTCATCAGCTGAAGTGTACTCCACTATTTCAGTACACAAATTGCTGCACTTAATAGTTCC 36133 Query 153722 GCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCC 153781 ||| |||| || ||||||||||| || | ||| || || | ||| |||||||| || Sbjct 36134 TAGATTTTTTTGGTTACTTTTGCGGTTGCACGAGTCTTTATACAACATATATGGTGTTCC 36193 Query 153782 GGTTTCGGCTTGAATTTCTATAATAG 153807 ||||| |||| ||||||||||| Sbjct 36194 CGTTTCTACTTGTGCTTCTATAATAG 36219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495934583103200