Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq44 208 8e-49 seq616 132 5e-26 seq36 118 1e-21 seq4 91.5 1e-13 seq116 89.7 5e-13 >seq44 Length=1464967 Score = 208 bits (230), Expect = 8e-49 Identities = 349/497 (70%), Gaps = 12/497 (2%) Strand=Plus/Minus Query 19411 GGGTTCGCGCCATTGCCGCCTGGAAACTCCCAATCGATATCGACGCCATCGAAGAATTTC 19470 ||||| || || || || || || ||||||||||| ||||| |||||||||||||||||| Sbjct 1426893 GGGTTAGCTCCCTTACCTCCAGGGAACTCCCAATCAATATCAACGCCATCGAAGAATTTC 1426834 Query 19471 CACGTTTCTAGATACTCTTGGACCGAATCGATAAAC--GTCTGCCGTACGCTCTTGTCGT 19528 || || | || | | || | ||| ||| | | || |||| | || || ||||| | Sbjct 1426833 CAGGTCTGTAAAAAGTCCTTGACTGAACCAACGAAGCGGTCTCTCTTAA-CT-TTGTCAT 1426776 Query 19529 GCATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGAT 19588 | | | || || || | || ||||| || |||| ||||| || | || || | Sbjct 1426775 CGAAGAAGAAGAAGGGATCAGCCAGGGTCCAACCACCGACTGAAGGAAGAATCTTCAGGT 1426716 Query 19589 GAGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCC 19648 ||| || ||| ||| ||| ||||| || || ||||| ||||| || || |||| Sbjct 1426715 CAGGTTTGGCCTGTTTCAACATCATCAGTTGACCGAAATTGCCCTTGTAAGGCTCATTCC 1426656 Query 19649 ATG-CGCTGACACCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACT 19707 | | || | | |||| | || ||| || | || |||||||||||||| |||| ||| Sbjct 1426655 AGGACGATAAGCCCTTCTGTGGCTTT-TGCAAAGCAGCCCAAGGATCGTGGATGGATACT 1426597 Query 19708 TTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTT 19767 |||||||| | |||||| || || ||||||| |||| |||||| ||| || || Sbjct 1426596 TTGAAGTCTTCCCGACCGCTGCAGGAGCGTTGCAGTGCTTGGAAACTACCC---TCAATT 1426540 Query 19768 ---TTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAA 19824 || | || || ||||| || || ||||| || || | ||| |||||||| || Sbjct 1426539 TCCTTCAAACTGTCGTTAATGCCATCACCGCCGCAAATCGGGATGAAGCCGTACAATAAG 1426480 Query 19825 TGCGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCAT 19884 || | || ||| || ||| ||||| || ||||| |||| |||||| ||||| |||||| Sbjct 1426479 TGGGTCAGGTTGGGAACGGGAACTTTGTCTACGGGGAACTTTCGCGGGTACACGCCCCAT 1426420 Query 19885 TCGACAAAGTATGCACC 19901 || || ||||| ||||| Sbjct 1426419 TCTACGAAGTACGCACC 1426403 >seq616 Length=113079 Score = 132 bits (146), Expect = 5e-26 Identities = 479/742 (65%), Gaps = 13/742 (2%) Strand=Plus/Plus Query 156494 TTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAAACGGT 156553 || |||||||||||||| || || | ||| |||||| | | | ||| | | ||| Sbjct 35481 TTAACAACTTGAAATTCACCTGATAGAACGCGTCTCTGATATATATTGGAGGTTATGGGT 35540 Query 156554 TCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACA 156613 ||||||||||| || ||| || ||||| || || | || || |||||| || || Sbjct 35541 TCAAATGACTCATTATTGCCAAGAATTTGAGCTGTAGATGCTGTGGGCATGGGAGCTACT 35600 Query 156614 AGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCCCAT 156673 | | ||| || | | || | |||| || ||| |||||| | ||||||||| Sbjct 35601 AAAAGTGAGTTTCTAAGGCCATGTTTTGCAATTTTTTCTTTCAAGGCAGTCCAGTCCCAC 35660 Query 156674 AACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTA 156733 || ||| || | ||||||||| ||||||||| || ||||||| |||||| || Sbjct 35661 AAGTTAGTTGGAGTCTTATTCCACATATCGTATTGTAAAATTCCTTGGCTCGCCGGACTG 35720 Query 156734 CCGGCAAACGTGCTATAAGGCTCACTA-ACAGATGCCAGTTCGTAACTGGCCTCGAGCGC 156792 || || | || || || ||| || || | || | || || || || || Sbjct 35721 CCTTCATAAGTTTCAT-AGACTCCATATTTTTCGGCTAATTGACAGCTTGCTTCAAGTGC 35779 Query 156793 AGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACGTA 156852 | | ||| | |||||| ||||||| ||| | | ||| | || || |||| Sbjct 35780 TCCGTAATAAATTGTTTCAAATATTTGTTGATTTAGCTTTATGGCCGGTTCACTATCGTA 35839 Query 156853 CGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACG 156912 || || |||| | || ||||| || || || ||||| | || || || || || | Sbjct 35840 TGGAATACGCATAAGAATAAATGTGTCTGCTAATCCTTGCACTCCTATACCAATTGGTCT 35899 Query 156913 ATGGCGCATATTAGAtttttttGCAGTTTC---AATAGGGTAGAAATTGCGATCAATAAT 156969 || | |||||| ||| |||| || ||| || ||||| |||| |||||||| Sbjct 35900 GTGTCTCATATTGGATGTTTT---AGCTTCAGGAACTGGGTAATAATTAACTTCAATAAT 35956 Query 156970 TTTATTCAAACTATCCACTA-CATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAG 157028 |||||| | | | | || || |||| || | | | | ||||| | | Sbjct 35957 TTTATTAAGATTCTGTGTTATGATTTTTG-TAACTTCTTTTAGTTTATCAAAATTGTATG 36015 Query 157029 ---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTT 157085 |||| | ||||| | | | || | ||||| || || | ||| || || ||| | Sbjct 36016 TTTTATCTTCATTGACAAACATGTTAAGTGCAATAGAGGCCAAATTGCAAACAGCAACCT 36075 Query 157086 CGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGC 157145 | || | | || | |||||||| | ||||||||||||||| || || ||| Sbjct 36076 CATCAGCTGAAGTGTACTCCACTATTTCAGTACACAAATTGCTGCACTTAATAGTTCCTA 36135 Query 157146 AATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGG 157205 ||| |||| || |||||||||||||| | ||| || || ||||| || ||||| || | Sbjct 36136 GATTTTTTTGGTTACTTTTGCGGTTGCACGAGTCTTTATACAACATATATGGTGTTCCCG 36195 Query 157206 TTTCGGCTTGAATTTCTATGAT 157227 |||| |||| |||||| || Sbjct 36196 TTTCTACTTGTGCTTCTATAAT 36217 >seq36 Length=1647457 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 |||||||| | |||||||| ||||| || ||||| ||| | || | ||| ||| Sbjct 935554 ACTAAATGCAAAGTAGATTCCTTTTGGATATTGTAGTCGGAGAGAGTACGGCCGTCCTCG 935613 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || || ||||| ||| |||| || || |||||||| ||||| |||||||| ||||| | Sbjct 935614 AGCTGCTTACCGGCAAAGATAAGTCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGA 935673 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| || | | || | ||||| | || || ||||||| || | ||| || Sbjct 935674 ATTTTGGCCTTAACATTCTCAATTGTGTCAGAAGGCTCCACTTCAAGTGTGATCGTTTTA 935733 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||||| || || ||||||||||||||| Sbjct 935734 CCGGTCAGCGTCTTAACGAATATTTGCATA 935763 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 |||||||| | || || ||||| || ||||||||||| || |||| ||| || Sbjct 937309 ACTAAATGCAGAGTGGACTCTTTCTGAATGTTGTAATCTGACAGAGTGCGGCCGTCCTCA 937368 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || ||||| || ||| |||| || || |||||||| ||||| |||||||| || || Sbjct 937369 AGCTGTTTTCCGGCAAAGATAAGTCGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGG 937428 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| ||| | | || | ||||||| ||||| ||||| | || | || ||| Sbjct 937429 ATTTTAGCTTTAACATTCTCAATTGTGTCCGATGGTTCCACTTCCAGTGTGATTGTTTTG 937488 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || |||| || || || || ||||||||| Sbjct 937489 CCAGTCAGCGTCTTGACAAAAATTTGCATA 937518 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || || || ||||| ||||| | |||| |||||| | ||| Sbjct 455120 TGAAGAGTTGACTCCTTCTGGATGTTATAATCTGAGAGGGTGCGGCCGTCTTCTAATTGC 455061 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || |||||| ||||||| || |||||||| || || || ||||| || || |||||| Sbjct 455060 TTTCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGAATACCTTCCTTATCTTGAATTTTA 455001 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | || | ||||| | || || ||||| | ||| | || || || ||| Sbjct 455000 GCTTTGACGTTCTCAATAGTGTCTGACGGCTCAACTTCGAGAGTGATGGTTTTACCAGTC 454941 Query 143162 AATGTTTTTACGAATATTTGCATAGCTTAT 143191 || ||||||||||| || ||||| ||||| Sbjct 454940 AAGGTTTTTACGAAAATCTGCAT--CTTAT 454913 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| ||| ||||| || || |||||||| || | |||| | ||||| Sbjct 937537 ACCAAGTGAAGTGTGGATTCCTTCTGAATGTTGTAGTCTGATAGAGTGCGCCCATCTTCT 937596 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | || || || ||| | || ||||| |||||||| ||||| |||||||||||||| Sbjct 937597 AACTGCTTTCCGGCAAAAATGAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGG 937656 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| || | | ||| | ||||| | || || ||||| | ||| | || || Sbjct 937657 ATTTTGGCCTTCACATTTTCAATAGTGTCTGAAGGCTCAACTTCCAAAGTGATAGTTTTC 937716 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || || |||||||| || ||||| Sbjct 937717 CCAGTTAAAGTCTTTACGAAGATCTGCAT 937745 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||||| || || || |||||||| ||| | |||| || ||||| ||| Sbjct 456257 TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGT 456198 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || ||||| |||||| || ||||| || || || |||||||||||||| || ||| Sbjct 456197 TTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGGATCTTT 456138 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 |||| | || | ||||| | || || ||||||| ||| | || ||||| || Sbjct 456137 GCCTTTACATTCTCAATGGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTTTGCCAGTA 456078 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | || || || || || |||||| Sbjct 456077 AGGGTCTTGACAAAGATCTGCATA 456054 >seq4 Length=2913607 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 60391 GCTTCAATGTTGCCCAAATCACCGACGTGTCTCACCGCAGCGTTGGGCGCACCATGAT-- 60448 || ||||||||||| | |||||||||||| | ||| | |||| ||| |||| || | Sbjct 2347997 GCCTCAATGTTGCCGAGATCACCGACGTGACGCACGGACGCGTCGGGGCCACCGTGCTCC 2347938 Query 60449 TGCTACCCGTCGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCAA 60508 |||| | ||| ||||| || | |||||||| || |||||||| || |||| || | Sbjct 2347937 TGCT--TCAGCGGGTTAAAGTGCGCGCCGGCCGATGTGCAGCCGTTTGTGTTGTCACCGA 2347880 Query 60509 ATTCGTGTACGTGAAAACCGTGC 60531 | || || ||||| ||||||||| Sbjct 2347879 ACTCATGCACGTGGAAACCGTGC 2347857 >seq116 Length=882076 Score = 89.7 bits (98), Expect = 5e-13 Identities = 101/134 (75%), Gaps = 6/134 (4%) Strand=Plus/Plus Query 129565 GCAGGATTTTTCTACACGGGACAAAGCGACAAAGTTAAATGTTTCGCCTGCGACGGAGGC 129624 ||||||||||||||||| || ||| | || ||| ||||||||| ||||| ||||| Sbjct 457935 GCAGGATTTTTCTACACCGGCCAAGGGGATAAAACGAAATGTTTCTATTGCGATGGAGGT 457994 Query 129625 CTAAAAGAATGGACGGAAGGCGACGATG---CTTTTGAATTGCACGCCCGTTGGTTTGAT 129681 || ||||| || |||| |||||||| | | ||| ||| ||||||||||| ||| Sbjct 457995 CTCAAAGATTG---GGAAAACGACGATGTTCCATGGGAACAGCATGCCCGTTGGTTCGAT 458051 Query 129682 CGGTGTTCGTACGT 129695 || ||| |||| || Sbjct 458052 CGTTGTGCGTATGT 458065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506882126280720