Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq36 98.7 7e-16 seq405 93.3 3e-14 >seq36 Length=1647457 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || ||||| ||||||||||| || | | | || || Sbjct 455582 ACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCCTCA 455523 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||| || | ||||| || || ||||| ||||| ||||||||||| Sbjct 455522 AGCTGTTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGG 455463 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| ||| | || || || || | || || || | ||| |||||||| Sbjct 455462 ATCTTTGC-CTTAACATTCTCGATAGTGTCTGAAGGCTCAACCTCAAGGGTGATGGTTTT 455404 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| || ||||| ||||| || |||||| Sbjct 455403 ACCTGTGAGGGTTTTGACAAAGATCTGCATA 455373 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || |||||||| ||| || | | | || || | ||| Sbjct 455348 TGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTGT 455289 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | |||||||| |||||||| ||||| ||||||||||| || ||| Sbjct 455288 TTGCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGAATGCCTTCTTTGTCTTGGATCTTG 455229 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||||| |||| || || || | || || || | ||| || ||||| || || Sbjct 455228 GCCTTTACATTTTCAATAGTGTCTGAAGGCTCAACCTCAAGGGTGATTGTTTTGCCAGTA 455169 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || |||||| Sbjct 455168 AGGGTCTTGACAAAGATCTGCATA 455145 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| ||||| || || || |||||||| || |||| | | | | |||||| Sbjct 937537 ACCAAGTGAAGTGTGGATTCCTTCTGAATGTTGTAGTCTGATAGAGTGCGCCCATCTTCT 937596 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || || || | || | ||| || || || ||||| ||||||||||| Sbjct 937597 AACTGCTTTCCGGCAAAAATGAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGG 937656 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| |||| || || || | || || || || || || ||||| Sbjct 937657 ATTTTGGCCTTCACATTTTCAATAGTGTCTGAAGGCTCAACTTCCAAAGTGATAGTTTTC 937716 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || || | ||| ||||| || || ||||| ||||| Sbjct 937717 CCAGTTAAAGTCTTTACGAAGATCTGCAT-TTTGA 937750 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || |||||||| ||| || | | | || || | ||| Sbjct 456257 TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGT 456198 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 ||||||||| | ||||| || || ||||| ||||| ||||||||||| || ||| Sbjct 456197 TTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGGATCTTT 456138 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||||||| | || ||||| || | || || || | ||||| ||||| || || Sbjct 456137 GC-CTTTACATTCTCAATGGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTTTGCCAGT 456079 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || |||||| Sbjct 456078 AAGGGTCTTGACAAAGATCTGCATA 456054 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || ||||| ||||||||||| || | | | || || Sbjct 455810 ACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCCTCG 455751 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||| ||| | ||||| || || ||||| ||||| || || ||||| Sbjct 455750 AGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 455691 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||||||| | || || || || ||| || || | ||||| ||||| Sbjct 455690 ATCTTAGCCTTTACATTCTCAATAGTGTCAGATGGTTCCACTTCCAGTGTAATAGTTTTT 455631 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| || || || |||||| Sbjct 455630 CCAGTGAGAGTTTTAACGAAGATCTGCATA 455601 >seq405 Length=236348 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 109589 GTATTTGTTGGTGTTATAAAATTGATCGCCCATCATGGGAAGACCGATCAAAGGCACGAG 109648 ||||||||||||||| || | ||||| |||| |||||||| |||| ||| || || Sbjct 215442 GTATTTGTTGGTGTTGTACCACTGATCTCCCAGCATGGGAATGCCGACCAACGGTACCTT 215383 Query 109649 CGCGTCGACTGCCTCGTCGGTCGATTGTACGCCTCCTTGCGTGACAAACGCTTTGA 109704 |||| | ||||||||||||||| || | || |||||||| || || ||||||| Sbjct 215382 GGCGTTAAATGCCTCGTCGGTCGACTGAGCACCGCCTTGCGTCACGAATGCTTTGA 215327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362087074174611