Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq44 264 9e-66 seq4 109 5e-19 seq36 98.7 8e-16 >seq44 Length=1464967 Score = 264 bits (292), Expect = 9e-66 Identities = 365/507 (72%), Gaps = 8/507 (2%) Strand=Plus/Minus Query 100787 CCAAGAGTC-GGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGTC 100845 ||||| ||| ||||| || || || || || || |||||||| ||||| || ||||| || Sbjct 1426902 CCAAG-GTCAGGGTTAGCTCCCTTACCTCCAGGGAACTCCCAATCAATATCAACGCCATC 1426844 Query 100846 AAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTT--- 100902 || || ||||| ||| ||||| |||||||| || | || || | | || Sbjct 1426843 GAAGAATTTCCAGGTCTGTAAAAAGTCCTTGACTGAACCAACGAAGCGGTCTCTCTTAAC 1426784 Query 100903 TTCCGCATCGTGCATGAAATAGAACGGGTCGGACAACGTCCAGCCGCCGATGGACGGCAG 100962 || ||||| | ||| |||| || || | || ||||| || |||| || || || Sbjct 1426783 TTTGTCATCG---AAGAAGAAGAAGGGATCAGCCAGGGTCCAACCACCGACTGAAGGAAG 1426727 Query 100963 AATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTGTA 101022 ||| || |||| || |||||| | || | ||| || |||||||||||||||||||| Sbjct 1426726 AATCTTCAGGTCAGGTTTGGCCTGTTTCAACATCATCAGTTGACCGAAATTGCCCTTGTA 1426667 Query 101023 CGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTG 101082 ||||| ||||| | || | |||||| || || ||||| | || ||||| |||||||| Sbjct 1426666 AGGCTCATTCCAGGACGATAAGCCCTTCTGTGGCTTTTGCAAAGCAGCCCAAGGATCGTG 1426607 Query 101083 AATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCC 101142 |||| |||||||| ||| ||||| |||||||||| ||||| |||| ||||| || Sbjct 1426606 GATGGATACTTTGAAGTCTTCCCGACCGCTGCAGGAGCGTTGCAGTGCTTGGAAACTACC 1426547 Query 101143 GGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTA 101202 ||| || | |||||| | ||| || ||||||||||| || ||||| ||||| Sbjct 1426546 CTCAATTTCCTTCAAACTGTCGTTAATGCCATCACCGCCGCAAATCGGGATGAAGCCGTA 1426487 Query 101203 CAACAGATGCGAGAGATTGGGCAGCGGCACTTTGTCTACCGGAAAATTGCGGCCGTACAC 101262 ||| | || | || ||||| | || ||||||||||| || || || || |||||| Sbjct 1426486 CAATAAGTGGGTCAGGTTGGGAACGGGAACTTTGTCTACGGGGAACTTTCGCGGGTACAC 1426427 Query 101263 GCCCCACTCTACAAAATACGCAGCGAC 101289 |||||| ||||| || |||||| |||| Sbjct 1426426 GCCCCATTCTACGAAGTACGCACCGAC 1426400 >seq4 Length=2913607 Score = 109 bits (120), Expect = 5e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 21141 GTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTGCGT 21200 |||||| ||||| |||||||| ||| | | |||||||| | ||||| | || | | Sbjct 2347989 GTTGCCGAGATCACCGACGTGACGCACGGACGCGTCGGGGCCACCGTGCTCCTGCTTCAG 2347930 Query 21201 AGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGAAC 21260 |||||||||||| ||||||| || ||||||||||| || |||| |||||||| || || Sbjct 2347929 CGGGTTAAAGTGCGCGCCGGCCGATGTGCAGCCGTTTGTGTTGTCACCGAACTCATGCAC 2347870 Query 21261 GTGAAAGCCGTGC 21273 ||| || |||||| Sbjct 2347869 GTGGAAACCGTGC 2347857 >seq36 Length=1647457 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || || ||||||||||| |||||||| | | || | | ||||| Sbjct 455582 ACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCCTCA 455523 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| | || | || |||||| || ||| | ||| |||||||| Sbjct 455522 AGCTGTTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGG 455463 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | ||| ||| || |||||| || | ||| ||||||||| Sbjct 455462 ATCTTTGCCTTAACATTCTCGATAGTGTCTGAAGGCTCAACCTCAAGGGTGATGGTTTTA 455403 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| | ||||||||||| || ||||| Sbjct 455402 CCTGTGAGGGTTTTGACAAAGATCTGCAT 455374 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| || ||||| || ||||| |||||||| | || || | ||||||| |||||| Sbjct 937315 TGCAGAGTGGACTCTTTCTGAATGTTGTAATCTGACAGAGTGCGGCCGTCCTCAAGCTGT 937374 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | ||||||| ||||||||| || | ||| || || || ||||| Sbjct 937375 TTTCCGGCAAAGATAAGTCGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGGATTTTA 937434 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | | | || || || ||| ||| | || || ||||| || || Sbjct 937435 GCTTTAACATTCTCAATTGTGTCCGATGGTTCCACTTCCAGTGTGATTGTTTTGCCAGTC 937494 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | || ||||||||||||||||| Sbjct 937495 AGCGTCTTGACAAAAATTTGCAT 937517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414467347060174