Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq158 156 1e-32 seq36 149 1e-30 seq175 96.9 8e-15 seq200 87.8 4e-12 >seq158 Length=707457 Score = 156 bits (172), Expect = 1e-32 Identities = 180/240 (75%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 104326 ATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATA 104385 ||||| || ||||| |||||||| || | || | || ||||||||||| ||||| || Sbjct 607308 ATTTA--CCTCCTCTAAGCCTAAGCACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTA 607251 Query 104386 GTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATC 104445 ||||| ||||| | || ||||| | || || || || || || || | |||||| || Sbjct 607250 ATCAGACAGAGTACGGCCATCTTCCAACTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTC 607191 Query 104446 AGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG 104505 ||||| || ||||||||||| || ||||| || || |||||||| | ||| || || Sbjct 607190 CGGAGGGATACCTTCTTTATCTTGGATCTTAGCCTTCACATTTTCGATGGTGTCTGAAGC 607131 Query 104506 TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT-TTGT 104564 || ||||| || || || ||||| || || || ||||| || |||||||||||| |||| Sbjct 607130 CTCCACCTCAAGGGTGATGGTCTTCCCCGTTAGGGTTTTGACGAATATCTGCATTGTTGT 607071 >seq36 Length=1647457 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || || ||||||| ||| | || || ||||||||||| || || || Sbjct 937288 ATTCCACCGCGGAGTCTGAGTACTAAATGCAGAGTGGACTCTTTCTGAATGTTGTAATCT 937347 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||||| || || |||||||| ||||| || || | ||| ||||| ||| Sbjct 937348 GACAGAGTGCGGCCGTCCTCAAGCTGTTTTCCGGCAAAGATAAGTCGCTGCTGATCTGGA 937407 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| || || ||||| ||||| || | || || ||||| Sbjct 937408 GGAATGCCTTCCTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCCGATGGTTCC 937467 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || || ||||| || || || ||||| || ||||| Sbjct 937468 ACTTCCAGTGTGATTGTTTTGCCAGTCAGCGTCTTGACAAAAATTTGCAT 937517 Score = 143 bits (158), Expect = 6e-29 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| ||||| |||||||| || ||||| |||||||| | || ||||||| || ||||| Sbjct 937548 TGTGGATTCCTTCTGAATGTTGTAGTCTGATAGAGTGCGCCCATCTTCTAACTGCTTTCC 937607 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 |||||||| || | ||| ||||| ||||| || |||||||| || || || || || || Sbjct 937608 GGCAAAAATGAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTT 937667 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 |||||||| | || || ||| || || || | || ||||| || ||||| | || Sbjct 937668 CACATTTTCAATAGTGTCTGAAGGCTCAACTTCCAAAGTGATAGTTTTCCCAGTTAAAGT 937727 Query 104542 TTTTACAAATATCTGCATTTTG 104563 ||||| || |||||||||||| Sbjct 937728 CTTTACGAAGATCTGCATTTTG 937749 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || ||||| || || || || | |||||||||| ||| |||||| Sbjct 455114 GTTGACTCCTTCTGGATGTTATAATCTGAGAGGGTGCGGCCGTCTTCTAATTGCTTTCCA 455055 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 455054 GCAAAGATCAGTCGCTGCTGATCTGGGGGAATACCTTCCTTATCTTGAATTTTAGCTTTG 454995 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || || || || || || || || |||||||| | ||| Sbjct 454994 ACGTTCTCAATAGTGTCTGACGGCTCAACTTCGAGAGTGATGGTTTTACCAGTCAAGGTT 454935 Query 104543 TTTACAAATATCTGCATTTT 104562 ||||| || |||||||| || Sbjct 454934 TTTACGAAAATCTGCATCTT 454915 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || || || || ||||| || Sbjct 455342 GTTGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTGTTTGCCG 455283 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | |||||| || || || || |||||||| || || ||||| || ||| Sbjct 455282 GCGAAGATCAAACGCTGTTGGTCTGGGGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTT 455223 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || || ||| || ||||| || || || || || |||||||| || Sbjct 455222 ACATTTTCAATAGTGTCTGAAGGCTCAACCTCAAGGGTGATTGTTTTGCCAGTAAGGGTC 455163 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 455162 TTGACAAAGATCTGCAT 455146 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| | || | || ||||| || ||||| || || ||||| || || | || || Sbjct 455814 AAGTACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATC 455755 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || ||||| || || || || | | ||| || || || || || || || || || Sbjct 455754 CTCGAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 455695 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| || |||||||| || | || || ||||| || || ||||||||||| Sbjct 455694 TTGGATCTTAGCCTTTACATTCTCAATAGTGTCAGATGGTTCCACTTCCAGTGTAATAGT 455635 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| || || |||||||| Sbjct 455634 TTTTCCAGTGAGAGTTTTAACGAAGATCTGCAT 455602 >seq175 Length=629782 Score = 96.9 bits (106), Expect = 8e-15 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 |||| |||||| ||||||||||| ||||| || ||||| |||||||| ||||| ||||| Sbjct 293527 ATTA-CCTCTGCTGATCAGGAGGGATTCCCTCCTTATCTTGAATCTTGGCTTTCACATTC 293585 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || || ||||| || || || ||||| || || || || || || Sbjct 293586 TCGATAGTGTCCGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTCTTAACG 293645 Query 104549 AATATCTGCATTTTG 104563 || |||||||| ||| Sbjct 293646 AAGATCTGCATCTTG 293660 >seq200 Length=575180 Score = 87.8 bits (96), Expect = 4e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 ||| ||||| || || |||||||| || |||| |||| ||||| || || | | || Sbjct 474055 TGACGGTATTGTCAATGAAAATCTTGTTGAGAGATTCTCGCAAGAAGTGCAAGTGACGGA 474114 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTAC 268993 || || ||||| ||||||||||| ||||| || || ||| | || |||||||||||| Sbjct 474115 GGCAAGGTGTTTCTACGGATTCCAAATAGCCATGGAGAATGTGCACTCAGAGATGTAC 474172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151090504913668