Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq616 527 8e-145 seq200 89.7 6e-13 >seq616 Length=113079 Score = 527 bits (584), Expect = 8e-145 Identities = 1214/1806 (67%), Gaps = 52/1806 (3%) Strand=Plus/Plus Query 61973 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCG---GATGCGGGTTTCGTACG 62029 ||| | |||| ||||| | || ||||| || |||| | ||| ||||| ||||| Sbjct 35120 TTTAACTTTAGATTTGTCTACAGTAAATTGTAT---AGCGTTTGCTGCAGGTTTAGTACG 35176 Query 62030 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 62089 |||||| |||||||| ||||| | ||| | |||| |||||||| ||| ||||| Sbjct 35177 TAGATAATACATTCCTGTTTTCAAACCCATTTTCCAGGAATAAAAATGAATAGAAGTTAG 35236 Query 62090 TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGC 62149 || |||| | || ||||| | ||| || || | ||||| |||||||| || || || Sbjct 35237 CTTCCCATAATTAGGTTCTGCAACATGAATGTTGAATGATTGGCTTTGATCTATAAATGC 35296 Query 62150 TCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 62209 |||||||||||| ||||||| || | ||||| | ||||||||||| |||||| || Sbjct 35297 TCCCCTGTCTGCTGCCATTTGAATAGTGGTCTTAACAGAAATTTCCCAAACAGTTTTGTA 35356 Query 62210 -AACTCGCTTAATATCTTCTGGAAGGTT---TGTATTCT--GAATGGATCCACCATCTGC 62263 || || || ||| |||| |||| || | || || | ||||| ||| | Sbjct 35357 CAAATCTCT-AATTTCTTTAGGAA--TTACCTCAATGCTTTGTATGGAGCCATTGTTGTG 35413 Query 62264 CATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAG 62323 || || || || || || |||| ||| |||| || || | | | | | || Sbjct 35414 GATGATAAGGTTTTTCATGTCTTCATCCCACAATTCAGCTTCTGTGAGATCACGTAATAG 35473 Query 62324 ATGCGGATTAACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACT 62380 ||| ||||||| ||||||||||| || || | || |||| || || ||||| Sbjct 35474 ATGGTGATTAACAACTTGAAATTCACCTGATAGAACGCGTCTCTGA---TATATATTGGA 35530 Query 62381 GGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 62440 ||| ||||| | ||||||||||| || | ||||||||| || ||||| || ||||| Sbjct 35531 GGTTATGGGTTCAAATGACTCATTATTGCCAAGAATTTGAGCTGTAGATGCTGTGGGCAT 35590 Query 62441 AGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGT 62498 || || || || | |||||||| || ||||| || ||||| ||||| | | Sbjct 35591 GGGAGCTACTAAAAGTGAGTTTCTAAGGCC--ATGTTTTGCAATTTTTTCTTTCAAGGCA 35648 Query 62499 TCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTA 62558 ||| | ||| | | | || ||||| ||| || | Sbjct 35649 GTCCAGTCCCACAAGTTAGTTGGAGTCTTATTCCACATATCGTATTGTAAAATTCCTTGG 35708 Query 62559 CTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACT 62617 || || | || ||| |||| || || || ||| | || || |||| || ||| || Sbjct 35709 CTCGCCGGACTG-CCTTCATAAGTTTCATAGACTCCATATTTTTCGGCTAATTGACAGCT 35767 Query 62618 CGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCT-- 62675 || || | ||| ||||||||||| ||||| || || | | |||||| | | || Sbjct 35768 TGCTTCAAGTGCTCCGTAATAAATTGTTTCAAATATTTGTTGATTTAGCTTTATGGCCGG 35827 Query 62676 TCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCA 62735 | || ||||| ||||| | | |||||||| | ||| ||||||||||| || || Sbjct 35828 TTCA--CTATCGTATGGAATACGCATAAGAATAAATGTGTCTGCTAATCCTTGCACTCCT 35885 Query 62736 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 62795 ||||| || ||||| |||||| |||| || ||| |||||| |||| || ||||||||| Sbjct 35886 ATACCAATTGGTCTGTGTCTCATATTGGATGTTTTAGCTTCAGGAACTGGGTAATAATTA 35945 Query 62796 ATATCTATAATTTTATTGAGATTTCTGACA-ATTACTTTGACCACATCCTTCAGTTTGAG 62854 | || ||||||||||| ||||| ||| || | ||| || || || ||||| Sbjct 35946 ACTTCAATAATTTTATTAAGATT-CTGTGTTATGATTTTTGTAACTTCTTTTAGTTTATC 36004 Query 62855 AAAATCAAATCGCCCATCT--ATT-ACAAACATGTTCAAGGCAACAGATGCCAGATTACA 62911 ||||| || |||| ||| ||||||||||| | |||| ||| |||| ||| || Sbjct 36005 AAAATTGTATGTTTTATCTTCATTGACAAACATGTTAAGTGCAATAGAGGCCAAATTGCA 36064 Query 62912 AACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 62971 ||| || ||||||| ||| | || | | ||| ||||| || | ||| || ||||| Sbjct 36065 AACAGCAACCTCATCAGCTGAAGTGTACTCCACTATTTCAGTACACAAATTGCTGCACTT 36124 Query 62972 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63031 |||||||||| ||||| ||| ||||| || ||| |||| || ||||| | || | Sbjct 36125 AATAGTTCCTAGATTTTTTTGGTTACTTTTGCGGTTGCACGAGTCTTTATACAACATATA 36184 Query 63032 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 63091 ||| || || ||||| | || | ||||||||| |||||||| | | ||| ||||| Sbjct 36185 TGGTGTTCCCGTTTCTACTTGTGCTTCTATAATAGCTTTCCACAGAGCCTGAG-CTTTA- 36242 Query 63092 TATAGATT--TGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCT 63149 | | || ||| ||||| |||| ||| | || | | || || || ||| Sbjct 36243 ACTTGCTTAACAAATCGATTTTCTTTTTCATATTTCTTGTATAGTGCCTCAAATTCTTCT 36302 Query 63150 CCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 63209 |||||| || | || || ||||| |||| |||||||| | ||| | | | | | Sbjct 36303 CCCCAACAATCTGCTAAGCCTGGACAGTCATGAGGACACATAAGACTCCAATTTTCATTA 36362 Query 63210 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 63269 || |||| ||||||||| | |||||| ||||| | ||| ||| || ||||| | | Sbjct 36363 CTCTCTACTCTTTTCATAAATAAATCAGGTATCCATAAAGCATAAAAGAGTTCTCTAGCT 36422 Query 63270 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 63329 | ||| || || || ||||| ||||| ||||| | ||| | | |||||| | |||| Sbjct 36423 CGTACTTCTTCTTTGCCAGTATTTTTTTTCAGATCTAAGAATTCGAAAATATCTGCATGC 36482 Query 63330 CACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTAT 63389 || ||||||||||||| || | | ||||||| ||||| || || || ||||||| ||| Sbjct 36483 CATGGTTCCAAGTATACTGCAAAAGCTCCAGGACGTTTATTGCCCCCTTGATCTACATAT 36542 Query 63390 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTA 63449 || || || || ||||| |||| |||||| || | || || || || | |||||| || Sbjct 36543 CTGGCAGTATTGTTATACACTCGCAACATAGGGACAAGGCCATTGGAGACACCATTTGTT 36602 Query 63450 CCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTG---ATAGA--CCTATTCCCC 63504 || | ||||| | || |||| | ||| | || || || || || || | Sbjct 36603 CCAGCAATATAAGTGCCTTTGGC-----TCTTATGCAGTGAACATGGACTCCAATACCTC 36657 Query 63505 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTAT 63564 | || |||||| ||||| || ||| | ||||| |||||||| || || || || |||| Sbjct 36658 CAGCAGATTTAGATATTAAAGCACATTGCTTTAATGTGTCATATATGCCTTCAATACTAT 36717 Query 63565 CATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 63624 |||| |||| || || || || ||| | || | || ||| | || || Sbjct 36718 CATCCTTCATTGCAACTAAGAAGCATGAAGATAGCTGTGGTCGTGGCGTTGCTGCTGAAA 36777 Query 63625 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63684 |||| || || || || ||||| ||||||| || |||| ||| || || ||||| | Sbjct 36778 ATAATGTCGGGCTGGCATGGGTAAAATATTTTTCCGACAGTAAATTATATGTATCAATTG 36837 Query 63685 CTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGT 63743 | | || ||||| || | || ||||||| | |||||||| | |||||| || || Sbjct 36838 CAGCATCAATATCTTCACCG-TGTATTCCTATAGACACACGCATCAGCATGTGTTGTGGC 36896 Query 63744 CTTTCA 63749 | |||| Sbjct 36897 CGTTCA 36902 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 63755 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814 |||||||||||| ||||||||||| ||| |||||||||||||||||||| ||||| || Sbjct 36990 CTTGTTGTTTATCTTCAACAAGTATGATCGCTCCAAAGTTTTAAAACCAAAGTAGTTATA 37049 Query 63815 TGAAAAGTCTCGTTCGTAAATAATA 63839 | ||| |||| || || | |||| Sbjct 37050 TTTAAAATCTCTGTCATACACAATA 37074 >seq200 Length=575180 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 ||||| || || || | || || ||||| || || |||||||||||||| || ||||| Sbjct 474171 TACATCTCTGAGTGCACATTCTCCATGGCTATTTGGAATCCGTAGAAACACCTTGCCTCC 474112 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714 || | || |||||| | |||| || | | ||||||||| || || |||||| Sbjct 474111 GTCACTTGCACTTCTTGCGAGAATCTCTCAACAAGATTTTCATTGACAATACCGTCAGAT 474052 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 33756 || ||||| || |||| |||||| || || |||| | | ||| Sbjct 474051 GCAGCAAAGAATGCCAGTACATGCTTGATGAAATGTCTCTCG 474010 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 || |||| ||| ||||| ||||| ||||| || || || || |||||||| ||||| | | Sbjct 473531 TTTGATAGATCAACTTCCTCCACGGTCCAGAAAGAAGCTTCGGCCTTTTTGTACATCTCC 473472 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 || || ||| ||||| || |||||||||||||| Sbjct 473471 CAAATATCAGGGTATTGAATGGGGAAAATAACAAA 473437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622784680862360