Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq44 226 2e-54 seq158 100 2e-16 seq36 96.9 3e-15 seq4 86.0 5e-12 >seq44 Length=1464967 Score = 226 bits (250), Expect = 2e-54 Identities = 775/1198 (65%), Gaps = 14/1198 (1%) Strand=Plus/Plus Query 55817 TAAAATCGTTGCCGCATATTTTGTCGAGTGGGGTGTTTATCATAGAAACTTTCCTGTCAC 55876 |||| | || | || || || || || ||||| || || | |||| || || || Sbjct 1426393 TAAAGTTGTCGGTGCGTACTTCGTAGAATGGGGCGTGTACCCGCGAAAGTTCCCCGTAGA 1426452 Query 55877 TCGAGTTCCCACTCCTAATCTGTCACACATTCTCTACGGATTCATACCGATATGCGGCGG 55936 ||||||| ||| || ||| | ||| | | ||||| ||||| ||||| |||||||| Sbjct 1426453 CAAAGTTCCCGTTCCCAACCTGACCCACTTATTGTACGGCTTCATCCCGATTTGCGGCGG 1426512 Query 55937 CGACGGCATTAACGACAGTCTCAAGACGATAACCGGTAGTTTTGAAGCGCTTCAGCGATC 55996 || ||||||||||||||| | ||| || |||||||| |||| || || || || Sbjct 1426513 TGATGGCATTAACGACAGTTTGAAGGAAATTGAGGGTAGTTTCCAAGCACTGCAACGCTC 1426572 Query 55997 GTGTTCGGGTCGAGACGACTTCAAAGTGTCGATTCATGACCCGTGGGCTGCGGTCCAAAA 56056 || ||||| || ||||||||||| || || || || || |||||||| | ||||| Sbjct 1426573 CTGCAGCGGTCGGGAAGACTTCAAAGTATCCATCCACGATCCTTGGGCTGCTTTGCAAAA 1426632 Query 56057 GCCCCAAAAACAAGTGACCGCATGGAACGAACCATACAAAGGCAACTTTGGACAATTGAT 56116 ||| || || | | | ||||| || || ||||| ||||| || || ||| |||| Sbjct 1426633 GCCACAGAAGGGCTTATCGTCCTGGAATGAGCCTTACAAGGGCAATTTCGGTCAACTGAT 1426692 Query 56117 GGCAGCTAAACTGGCGAATCCCCATGTTAAAGTGCTGCCTTCGATCGGTGGCTGGACTTT 56176 | |||| ||| || || | | || | || ||||| ||||||| ||||| | Sbjct 1426693 GATGTTGAAACAGGCCAAACCTGACCTGAAGATTCTTCCTTCAGTCGGTGGTTGGACCCT 1426752 Query 56177 ATCCGATCCGTTCTTTTACTTTCACGATGCGGTCAAACGCAAAATTTTTGTCGATTCTGT 56236 | ||||| ||||| | ||| | || || || | | || || | ||| || Sbjct 1426753 GGCTGATCCCTTCTTCTTCTTCGATGACAAAGTTAAGAGAGACCGCTTCGTTGGTTCAGT 1426812 Query 56237 CGTCGAGTTTTTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGACTGGGAGTTTCC 56296 | || |||||||||||||||||||| |||||||| || || || || |||||||| || Sbjct 1426813 CAAGGACTTTTTACAGACCTGGAAATTCTTCGATGGCGTTGATATTGATTGGGAGTTCCC 1426872 Query 56297 CGGCGGAAAGGGGGCCAATTCCAACGTCGGCGATGCCGAACGCGATCGCAACACGTACAC 56356 || || ||||| || || | || | || | | || || ||| | | | ||| Sbjct 1426873 TGGAGGTAAGGGAGCTAACCCTGACCTTGGTGGT-CCTAA--AGATGGTGAAATATACGT 1426929 Query 56357 GATTCTGTT--ACGAGATTTACGCGAAGCGCTAGACCGACTAAGCCTC-GA-AACGAATC 56412 || || | | ||| || | | | | || ||| | | || | || | || | Sbjct 1426930 GACACTCATGAAGGAGCTT--AGACACATGTTGGA-CGAGTTATCCGCTGAGACCGGAAA 1426986 Query 56413 GAACATACGAGCTAACCAGCGCCATTAGCGCCGGCGATGACAAAATCACGGTCGTCGACT 56472 ||| ||||||||| || ||||| || || || ||||| || ||| ||| ||| Sbjct 1426987 GAA-ATACGAGCTGACTTCTGCCATCAGTGCTGGGTGGGACAAGATTCAGGTTGTCAACT 1427045 Query 56473 ACACAGCCGCTCAAAAATATTTAGATTATAtttttttGATGACATACGATTTTAAAGGCG 56532 ||| | || || || || | || ||||||| |||||| ||||| || || || | Sbjct 1427046 ACAAGGAAGCCCAGAACTACATGGACCATATTTTCGTGATGAGCTACGACTTCAAGGGAG 1427105 Query 56533 CTTGGTCGAATAGCGATCTGGGCTATCAGACGACTTTGTACGCGCCTGCGTTTAATCCTA 56592 | ||||| ||| | ||| ||| | ||||| | || ||||| |||| || || || | Sbjct 1427106 CCTGGTCCAATGACACTCTTGGCCACCAGACCTCGTTATACGCTCCTGAGTGGAAACCCA 1427165 Query 56593 AAGAACACTATACGACCGATTTTGCGGTTCGTGCTCTGCTTAAACAAAAAGTCGAGAATA 56652 | || || || || || |||| || | ||| | || ||| || | Sbjct 1427166 AGGAGACTTACACTACTGACTTTGGTATTAGGTATCTTTTGGCTCAGGGAGTGCAGCCCA 1427225 Query 56653 AAAAGATTGTAGTCGGCGTAGCTATGTACGGTCGCGGGTGGACCGGCGTCGGTGATTTCG 56712 | ||| | || ||||| || |||||||||||||| || ||||| || ||| ||| | | Sbjct 1427226 AGAAGCTGGTCGTCGGTGTTGCTATGTACGGTCGTGGATGGACTGGAGTCCATGACTACA 1427285 Query 56713 TCGACAAAAACAATCCATTTTCCGGCACGGCCAAGGGACCTGTCAAAGGTACCTGGGAAG 56772 ||| | | | || || | || || | || ||||| |||||||| ||| | | Sbjct 1427286 AGGACGATATC---CCCTTCACAGGAGTAGCTGATGGCCCTGTTAAAGGTACTTGGCAGG 1427342 Query 56773 ACGGAGTCGTTGATTTTAGAGAAATTTTCAACTCTTTTGTGACTAACAAACCGATGGATC 56832 ||||||| || || | || || ||| ||| ||| | | | || ||| Sbjct 1427343 ACGGAGTGGTCGACTACAGGGAGATTGCCAATGGAATTGCCAGTGGTCAGTGGACCTATC 1427402 Query 56833 GTTACGATGCTATAGCAAAAGCGTCATACGTTTTTAATAATTCGACAGGTGATCTCATCA 56892 ||||| |||| |||| ||||||| || ||| ||| ||||| || || | | Sbjct 1427403 ACTACGACAAAGTAGCCCAAGCTCCATACGTCTTCAATCCTTCCACAGGAGACCTTGTTA 1427462 Query 56893 CTTACGACAGTCCCCAGTCGGTTCTGGATAAAGCAAAGTATGTGTTAGACTACAACTTGG 56952 | ||||| | | ||| || | || |||| || |||||| | |||| | | Sbjct 1427463 CCTACGATGATTCGAGGTCAGTCATCGAGAAAGGCAAATATGTGAGGAATAACAAACTAG 1427522 Query 56953 GTGGGTTGTTTGCGTGGGAAATCGATGCAGATAACGGATTACTTTTAAACGCAATGAA 57010 | || | || || |||||||| || || || ||||| || | ||||||||||| Sbjct 1427523 GCGGTCTTTTCGCTTGGGAAATAGACGCTGACAACGGTGATATTCTTAACGCAATGAA 1427580 >seq158 Length=707457 Score = 100 bits (110), Expect = 2e-16 Identities = 172/246 (70%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 23985 AACAA-AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 ||||| |||||| | || || ||||| |||| || || | || ||| | || || || Sbjct 607070 AACAACAATGCAGATATTCGTCAAAACCCTAACGGGGAAGACCATCACCCTTGAGGTGGA 607129 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 ||| ||||||||||| | || || ||||| || |||||||| || ||||| Sbjct 607130 GGCTTCAGACACCATCGAAAATGTGAAGGCTAAGATCCAAGATAAAGAAGGTATCCCTCC 607189 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 || |||||| |||| || | || ||||||||| | ||||||| | | | | || Sbjct 607190 GGACCAACAGCGACTCATCTTCGCCGGCAAGCAGTTGGAAGATGGCCGTACTCTGTCTGA 607249 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATA 24223 ||| || || || |||||||| || |||| || ||| | || | |||||||| || | Sbjct 607250 TTACAATATCCAGAAAGAATCCACTCTTCACTTGGTGCTTAGGCTTAGAGGAGG--TA-A 607306 Query 24224 ATGATT 24229 |||||| Sbjct 607307 ATGATT 607312 >seq36 Length=1647457 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| ||| | ||||| | ||||| ||| | Sbjct 456055 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAAACTATTACTCTTGAAGTTGAGCCTTCT 456114 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || |||||| |||||||||||||| || || || || Sbjct 456115 GACACCATTGAGAATGTAAAGGCAAAGATCCAAGACAAAGAAGGCATTCCCCCAGACCAG 456174 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| || |||| | || ||||| || ||||| |||| | | | | || ||| || ||| Sbjct 456175 CAGCGATTGATCTTCGCTGGCAAACAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 456234 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || || ||||| |||| Sbjct 456235 ATCCAGAAGGAGTCTACTCTTCA 456257 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23982 CCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 ||| | || ||||| | || |||||||| || ||||| ||| | || || ||||||| Sbjct 454909 CCAGATAAGATGCAGATTTTCGTAAAAACCTTGACTGGTAAAACCATCACTCTCGAAGTT 454968 Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 ||| | ||||| || ||| | |||||| || ||| || || ||||| || || Sbjct 454969 GAGCCGTCAGACACTATTGAGAACGTCAAAGCTAAAATTCAAGATAAGGAAGGTATTCCC 455028 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC 24161 || ||||| ||| ||||||| | | || |||||| | ||||| | | | | | || Sbjct 455029 CCAGATCAGCAGCGACTGATCTTTGCTGGAAAGCAATTAGAAGACGGCCGCACCCTCTCA 455088 Query 24162 GATTATAACATTCAAAAAGAATCTACAATTCA 24193 ||||||||||| || || || || || |||| Sbjct 455089 GATTATAACATCCAGAAGGAGTCAACTCTTCA 455120 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || || ||| | || ||| | || || ||| | Sbjct 455374 ATGCAGATCTTTGTCAAAACCCTCACAGGTAAAACCATCACCCTTGAGGTTGAGCCTTCA 455433 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || |||||| |||||||||||||| || || || || Sbjct 455434 GACACTATCGAGAATGTTAAGGCAAAGATCCAAGACAAAGAAGGCATTCCCCCAGACCAG 455493 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| || |||| | | |||||| || || || |||| | | | | | ||||| ||| Sbjct 455494 CAGCGATTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCCTTTCTGATTACAAC 455553 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| ||||| || Sbjct 455554 ATTCAAAAGGAATCCAC 455570 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||||||| | ||||| | ||||| || ||| | Sbjct 455602 ATGCAGATCTTCGTTAAAACTCTCACTGGAAAAACTATTACACTGGAAGTGGAA-CCATC 455660 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | || || ||||| ||||| || ||||| || || || || Sbjct 455661 TGACACTATTGAGAATGTAAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCA 455720 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || |||| | || |||||| || ||||| |||| | | | | | ||||| || Sbjct 455721 GCAGCGATTGATCTTCGCCGGCAAACAGCTCGAGGATGGCCGCACCCTTTCTGATTACAA 455780 Query 24170 CATTCAAAAAGAATCTAC 24187 ||||||||| ||||| || Sbjct 455781 CATTCAAAAGGAATCCAC 455798 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || ||||| || |||||||| ||| | || || | ||||| ||| | Sbjct 937749 CAAAATGCAGATCTTCGTAAAGACTTTAACTGGGAAAACTATCACTTTGGAAGTTGAGCC 937690 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||| || || | || || || || |||||||||||||| ||||| || Sbjct 937689 TTCAGACACTATTGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGA 937630 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | || |||| | ||| ||||| | ||||||| | | | || || Sbjct 937629 TCAGCAGCGTCTCATTTTTGCCGGAAAGCAGTTAGAAGATGGGCGCACTCTATCAGACTA 937570 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| || ||||| ||| |||| || ||| Sbjct 937569 CAACATTCAGAAGGAATCCACACTTCACTTGGTG 937536 >seq4 Length=2913607 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 101023 CACGGCTTTCATGTTCACGAATTCGGCGACACAAGCAACGGCTGCACGTCTGCGGGCGAA 101082 ||||| || || || || || ||||| |||| | ||||||||||| || || |||| Sbjct 2347858 CACGGTTTCCACGTGCATGAGTTCGGTGACAACACAAACGGCTGCACATCGGCCGGCGCG 2347917 Query 101083 CATTTTAACCCTACG-GGCATGGCTCACGGCGCACCCAACTCTGCCGTTCGTCACGTCGG 101141 || |||||||| | ||| || ||||| | ||| || | |||| ||||||||||| Sbjct 2347918 CACTTTAACCCGCTGAAGCA-GGAGCACGGTGGCCCCGACGCGTCCGTGCGTCACGTCGG 2347976 Query 101142 TGATCTTGGCAATATTGATGC 101162 |||||| ||||| ||||| || Sbjct 2347977 TGATCTCGGCAACATTGAGGC 2347997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429826639195005