Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq509 170 1e-37 seq4073 140 2e-28 seq158 127 1e-24 seq36 125 5e-24 seq116 107 1e-18 >seq509 Length=156790 Score = 170 bits (188), Expect = 1e-37 Identities = 136/164 (83%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497 || || |||||||| |||||||| | ||| ||||||||||| ||||| ||||| |||||| Sbjct 46805 TTCATCCGCAAGTTCGTGCTGTGCCCGGAGTGCGATAACCCCGAGACGGAGCTGATTGTG 46746 Query 6498 TCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTG 6557 || |||||| | ||||| || || ||||||||||| || ||||| ||||| ||| |||| Sbjct 46745 TCCACCAAGCGGAACACTATTTCGCAGGGCTGCAAGGCTTGCGGGTACCACGGCCAGCTC 46686 Query 6558 GATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || || ||||||||||||||||||||||||||||| || || Sbjct 46685 GACTTCAACCACAAACTCAACACCTTCATACTGAAGAACCCGCC 46642 Score = 145 bits (160), Expect = 5e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 6152 ATCGACCACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTA 6211 |||| || ||||||| | ||||||| || | || ||| |||||||||||||||| || Sbjct 48027 ATCGGTCAAGATGGGGTCGGTGAACGTGAACAGGAACGTGTCGGACGCGTTCTACCGGTA 47968 Query 6212 CAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCAT 6271 ||| |||||||| || ||||| ||||| ||||| || || ||||| || || |||||||| Sbjct 47967 CAAGATGCCGCGGATATGCGCTAAGGTGGAGGGCAAAGGCAACGGCATCAAGACCGTCAT 47908 Query 6272 TGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCAC 6316 ||||||||| ||||| || ||||||||||| | || ||||| Sbjct 47907 CGTCAACATGGTGGAAGTGGCCAAGGCGCTCGGCAGGCCAGCCAC 47863 Score = 122 bits (134), Expect = 6e-23 Identities = 141/190 (74%), Gaps = 9/190 (5%) Strand=Plus/Minus Query 6978 GTGAAATCAAAGGCGCCGCTGGTGCTTTTTGAGGTGCTGGTGCGTCCGGCCGCGCTGGCG 7037 ||||| || ||||||||||||||| | || |||||||||||||| | | ||||||||| Sbjct 44848 GTGAAGTCGAAGGCGCCGCTGGTGATATTCGAGGTGCTGGTGCGCGGGTCGGCGCTGGCG 44789 Query 7038 TGCGATGTGCGCAAGTACCGCGCGCTGTTGCTGCGCTTTACGCAACATGACCCGCGCGCG 7097 |||| ||||| ||||||||||| |||||||||| || | ||| |||||||| Sbjct 44788 GGCGACGTGCGGCGCCACCGCGCGCTGCTGCTGCGCTTCACCCGCGGCGACTCGCGCGCG 44729 Query 7098 CAACGC-GC--------CGTTCTCACTGCGCTTTGTGTGCTCGACACTGCGCTGCTGCCC 7148 || ||| || || ||||| ||||| || | || | || | ||||||||||| Sbjct 44728 CAGCGCAGCGCCCTGCACGCGCTCACCGCGCTCTGCGGGCACCACGCCACGCTGCTGCCC 44669 Query 7149 AAAGTGGCCG 7158 || ||| ||| Sbjct 44668 AAGGTGCCCG 44659 Score = 114 bits (126), Expect = 9e-21 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 |||||||||| || ||||| ||||| || ||||||||||||||||| || ||| |||| Sbjct 47283 ACCCGACGAAGTACTTCGGCTGCGAGCTCGGCGCTCAGACGCAGTTCGACTTCAAGAACG 47224 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGG 6436 |||| |||||||| ||||| || |||| ||||||||||||||| | || ||||| Sbjct 47223 AGCGGTTCATCGTCAACGGCAGCCACGACTCGGCCAAGCTGCAGGACCTGCTGGACGG 47166 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 7171 TGCTGTACGACCTAGACATAGTACAAGAGAAAACGATCATGGAGTGGTTCCACAAGCCGT 7230 ||||||||||| ||||| || |||| || ||||| |||| ||| | ||||| | Sbjct 44408 TGCTGTACGACGAGGACATTGTGGAAGAAAAGGCGATCCTGGAATGGGCCGCGAAGCCTT 44349 Query 7231 CGTGCAAGACTCTCAGCAAAG-AAGTGATGGCTGACGTGCACCGCCGCGCGCAGCCCTTC 7289 | | || | || | | ||| ||||| |||| ||||| | ||| ||||||||||| ||| Sbjct 44348 CACGTAA-ATTCGCGTCGAAGGAAGTGGTGGCAGACGTACGCCGGCGCGCGCAGCCGTTC 44290 Query 7290 CTGAACTGGCTGCAGCAAGCCGAGGATGATAGCAGCGA 7327 || ||||||||||| | |||||||| || |||||| Sbjct 44289 CTCGACTGGCTGCAGGAGGCCGAGGAGGACGACAGCGA 44252 >seq4073 Length=941 Score = 140 bits (154), Expect = 2e-28 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 499 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 440 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 439 GGTAATATTTAGCCTTA 423 >seq158 Length=707457 Score = 127 bits (140), Expect = 1e-24 Identities = 180/252 (71%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 38067 GAACAAATACAAATCCAATCATT-ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCT 38125 || || | ||||| ||||||||| ||| ||||| | | | |||||| ||||||||| Sbjct 607328 GAGCATAAACAAAACCAATCATTTACCTCCTCTAAGCCTAAGCACCAAGTGAAGAGTGGA 607269 Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 || || || |||||||||||||||| | ||| | || || || || || ||||| || Sbjct 607268 TTCTTTCTGGATATTGTAATCAGACAGAGTACGGCCATCTTCCAACTGCTTGCCGGCGAA 607209 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || || ||||| || | |||| |||||||| || || || ||||||||| Sbjct 607208 GATGAGTCGCTGTTGGTCCGGAGGGATACCTTCTTTATCTTGGATCTTAGCCTTCACATT 607149 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || || ||| | || || || | || || || || ||||| | |||||| || Sbjct 607148 TTCGATGGTGTCTGAAGCCTCCACCTCAAGGGTGATGGTCTTCCCCGTTAGGGTTTTGAC 607089 Query 38306 GAATATCTGCAT 38317 |||||||||||| Sbjct 607088 GAATATCTGCAT 607077 >seq36 Length=1647457 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 821241 CTCGCTCTTCAAAGTTCTTTTAAACTTTCCCTCACGGTGCTTGTTCGCTATCGGTCTCGC 821300 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 821301 GGTAATATTTAGCCTTA 821317 Score = 125 bits (138), Expect = 5e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | || | |||||| ||||| ||| ||||| ||||| ||||| || | Sbjct 937517 TACCACCGCGGAGGCGGAGCACCAAGTGAAGTGTGGATTCCTTCTGAATGTTGTAGTCTG 937576 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || ||||| || ||||||||||| || || || || ||||| | | Sbjct 937577 ATAGAGTGCGCCCATCTTCTAACTGCTTTCCGGCAAAAATGAGACGCTGCTGATCTGGAG 937636 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| ||||| ||||||||| | | ||| ||| | |||| Sbjct 937637 GAATGCCTTCTTTGTCTTGGATTTTGGCCTTCACATTTTCAATAGTGTCTGAAGGCTCAA 937696 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || || |||||||| || || || || || ||||| |||||||| || Sbjct 937697 CTTCCAAAGTGATAGTTTTCCCAGTTAAAGTCTTTACGAAGATCTGCATTTT 937748 Score = 122 bits (134), Expect = 6e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||||| |||||||| |||||| || || || ||||| | Sbjct 455146 TACCACCGCGCAGACGGAGCACCAGGTGAAGAGTTGACTCCTTCTGGATGTTATAATCTG 455087 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || |||| |||||||| ||||| ||||| || || || || ||||| | || Sbjct 455086 AGAGGGTGCGGCCGTCTTCTAATTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCTGGGG 455027 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || || |||||| || || |||| | ||| ||| |||| Sbjct 455026 GAATACCTTCCTTATCTTGAATTTTAGCTTTGACGTTCTCAATAGTGTCTGACGGCTCAA 454967 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| | || || |||||||| ||||||||||| ||||| |||||||| || Sbjct 454966 CTTCGAGAGTGATGGTTTTACCAGTCAAGGTTTTTACGAAAATCTGCATCTT 454915 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||||| || || ||| ||||||||||| |||||||||| Sbjct 455602 TACCACCACGCAGACGAAGTACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAG 455543 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || | ||||| |||||||| || | || || || || | || Sbjct 455542 AAAGGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGG 455483 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| || ||| ||| ||||||| || ||| ||| | |||| Sbjct 455482 GAATGCCTTCTTTGTCTTGGATCTTTGCCTTAACATTCTCGATAGTGTCTGAAGGCTCAA 455423 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || |||||||| || | |||||| || || |||||||| Sbjct 455422 CCTCAAGGGTGATGGTTTTACCTGTGAGGGTTTTGACAAAGATCTGCAT 455374 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||||| || || ||| ||||||||||| |||||||||| Sbjct 455830 TACCACCACGCAGACGAAGTACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAG 455771 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || | ||||| ||||| || || | || || || || | || Sbjct 455770 AAAGGGTGCGGCCATCCTCGAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGG 455711 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| || ||||| || || ||| ||||||| | ||| || ||| | Sbjct 455710 GAATGCCCTCCTTGTCTTGGATCTTAGCCTTTACATTCTCAATAGTGTCAGATGGTTCCA 455651 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | |||||||||||| || || | ||||| ||||| |||||||| Sbjct 455650 CTTCCAGTGTAATAGTTTTTCCAGTGAGAGTTTTAACGAAGATCTGCAT 455602 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 || ||||| |||||| ||| || ||||| |||||||| |||| | || |||| || Sbjct 937309 ACTAAATGCAGAGTGGACTCTTTCTGAATGTTGTAATCTGACAGAGTGCGGCCGTCCTCA 937368 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||||||||||| || || || || ||||| | || | |||||| || ||| Sbjct 937369 AGCTGTTTTCCGGCAAAGATAAGTCGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGG 937428 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| || ||||||| | || || ||| ||||| | ||| || ||||| Sbjct 937429 ATTTTAGCTTTAACATTCTCAATTGTGTCCGATGGTTCCACTTCCAGTGTGATTGTTTTG 937488 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||| || || || || || ||||| Sbjct 937489 CCAGTCAGCGTCTTGACAAAAATTTGCAT 937517 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||||| |||||||| ||| || || || ||||| || | Sbjct 456055 TACCACCACGCAGACGGAGCACCAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCTG 455996 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || | ||||| ||||| || || | || || || || | || Sbjct 455995 AAAGGGTGCGGCCATCCTCAAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGG 455936 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| || ||| ||| ||||||| |||| || ||| | Sbjct 455935 GAATGCCTTCTTTGTCTTGGATCTTTGCCTTTACATTCT---CAGTGTCAGATGGTTCCA 455879 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | |||||| ||||| || || | ||||| ||||| |||||||| Sbjct 455878 CTTCCAGTGTAATTGTTTTTCCAGTGAGAGTTTTAACGAAGATCTGCAT 455830 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| |||||||| |||||| || || ||||| || | Sbjct 455374 TACCACCACGAAGACGGAGCACCAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGG 455315 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | ||||| ||||| || || | || ||||| || | || Sbjct 455314 AAAGGGTACGGCCATCCTCAAGCTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCTGGGG 455255 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| || || ||| ||||| | | ||| ||| | |||| Sbjct 455254 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACATTTTCAATAGTGTCTGAAGGCTCAA 455195 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || ||||| || || | ||| || || || |||||||| Sbjct 455194 CCTCAAGGGTGATTGTTTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 455146 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38087 ATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146 ||| ||||| | | ||| | ||||| |||||||| |||||| || || ||||| || Sbjct 456285 ATTTCCACCGCGAAGACGAAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 456226 Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 || | || | || || | ||||| || || || || | || || || || | Sbjct 456225 GGAGAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGATCAATCGCTGCTGGTCTGG 456166 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 ||| | |||||||||||| || ||| ||| ||||||| | || || | || Sbjct 456165 GGGAATGCCTTCTTTGTCTTGGATCTTTGCCTTTACATTCTCAATGGTGTCAGAAGGCTC 456106 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| | ||||||||||| || || | ||| || || || |||||||| Sbjct 456105 AACTTCAAGAGTAATAGTTTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 456055 >seq116 Length=882076 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 74034 CAAAAACCTTTGGAGCTTGCTGAGGCGGGATTTTATTATACGAATAAAGGCGACAGAACA 74093 |||||||| ||| || || || || ||||||| || || |||| || | ||| Sbjct 457911 CAAAAACCAGAGGAACTCGCGGAAGCAGGATTTTTCTACACCGGCCAAGGGGATAAAACG 457970 Query 74094 AAGTGCTACTATTGTGACAATGGTTTAAAAGATTGGGAACCCGAAGATGTGCCCTGGGAA 74153 || || | |||||| || ||| | |||||||||||| ||| ||||| || |||||| Sbjct 457971 AAATGTTTCTATTGCGATGGAGGTCTCAAAGATTGGGAAAACGACGATGTTCCATGGGAA 458030 Query 74154 CAACACGCTCGTTGGTTTGACAAATGTGAATTTGTTAAAATTGTAAAAGGCGATCAGTAT 74213 || || || |||||||| || |||| | ||| || |||| |||||| | | ||| Sbjct 458031 CAGCATGCCCGTTGGTTCGATCGTTGTGCGTATGTGCAACTTGTTAAAGGCCGTGATTAT 458090 Query 74214 GTGCAAAAGGTTATATCAGAAGCGTGTGTAAT 74245 || || | ||| |||| ||||||||||| || Sbjct 458091 GTCCAGAGGGTATTATCGGAAGCGTGTGTTAT 458122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334862001050801