Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq616 553 2e-152 seq200 89.7 7e-13 >seq616 Length=113079 Score = 553 bits (612), Expect = 2e-152 Identities = 1220/1807 (68%), Gaps = 54/1807 (3%) Strand=Plus/Plus Query 61828 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCG---GATGCGGGTTTCGTACG 61884 ||| | |||| ||||| | || ||||| || |||| | ||| ||||| ||||| Sbjct 35120 TTTAACTTTAGATTTGTCTACAGTAAATTGTAT---AGCGTTTGCTGCAGGTTTAGTACG 35176 Query 61885 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 61944 |||||| |||||||| ||||| | ||| | |||| |||||||| ||| ||||| Sbjct 35177 TAGATAATACATTCCTGTTTTCAAACCCATTTTCCAGGAATAAAAATGAATAGAAGTTAG 35236 Query 61945 TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGC 62004 || |||| | || ||||| | ||| || || | ||||| |||||||| || || || Sbjct 35237 CTTCCCATAATTAGGTTCTGCAACATGAATGTTGAATGATTGGCTTTGATCTATAAATGC 35296 Query 62005 TCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 62064 |||||||||||| ||||||| ||| | ||||| | ||||||||||| |||||| || Sbjct 35297 TCCCCTGTCTGCTGCCATTTGAATAGTGGTCTTAACAGAAATTTCCCAAACAGTTTTGTA 35356 Query 62065 -AACTCGCTTAATATCTTCTGGAAGGTT---TGTATTCT--GAATGGATCCACCATCTGC 62118 || || || ||| |||| |||| || | || || | ||||| ||| | Sbjct 35357 CAAATCTCT-AATTTCTTTAGGAA--TTACCTCAATGCTTTGTATGGAGCCATTGTTGTG 35413 Query 62119 CATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAG 62178 || || || || || || |||| ||| |||| || || | | | | | || Sbjct 35414 GATGATAAGGTTTTTCATGTCTTCATCCCACAATTCAGCTTCTGTGAGATCACGTAATAG 35473 Query 62179 ATGCGGATTAACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACT 62235 ||| ||||||| ||||||||||| || || | || |||| || || ||||| Sbjct 35474 ATGGTGATTAACAACTTGAAATTCACCTGATAGAACGCGTCTCTGA---TATATATTGGA 35530 Query 62236 GGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCAT 62295 ||| ||||| | ||||||||||| || | ||||||||| || ||||| || ||||| Sbjct 35531 GGTTATGGGTTCAAATGACTCATTATTGCCAAGAATTTGAGCTGTAGATGCTGTGGGCAT 35590 Query 62296 AGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGT 62353 || || || || | |||||||| || ||||| || ||||| ||||| | | Sbjct 35591 GGGAGCTACTAAAAGTGAGTTTCTAAGGCC--ATGTTTTGCAATTTTTTCTTTCAAGGCA 35648 Query 62354 TCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTA 62413 ||| | ||| | | | || ||||| ||| || | Sbjct 35649 GTCCAGTCCCACAAGTTAGTTGGAGTCTTATTCCACATATCGTATTGTAAAATTCCTTGG 35708 Query 62414 CTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACT 62472 || || | || ||| |||| || || || ||| | || || |||| || ||| || Sbjct 35709 CTCGCCGGACTG-CCTTCATAAGTTTCATAGACTCCATATTTTTCGGCTAATTGACAGCT 35767 Query 62473 CGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCT-TG--CGC 62529 || || | ||| ||||||||||| ||||| || || | | |||||| | | || || Sbjct 35768 TGCTTCAAGTGCTCCGTAATAAATTGTTTCAAATATTTGTTGATTTAGCTTTATGGCCGG 35827 Query 62530 TTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACC 62589 ||| ||||| ||||| | | |||||||| | ||||||||||||||| || || Sbjct 35828 TTCA---CTATCGTATGGAATACGCATAAGAATAAATGTGTCTGCTAATCCTTGCACTCC 35884 Query 62590 AATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATT 62649 ||||| || ||||| |||||| |||| || ||| |||||| |||| || |||||||| Sbjct 35885 TATACCAATTGGTCTGTGTCTCATATTGGATGTTTTAGCTTCAGGAACTGGGTAATAATT 35944 Query 62650 AATATCTATAATTTTATTGAGATTTCTGACA-ATTACTTTGACCACATCCTTCAGTTTGA 62708 || || ||||||||||| ||||| ||| || | ||| || || || ||||| Sbjct 35945 AACTTCAATAATTTTATTAAGATT-CTGTGTTATGATTTTTGTAACTTCTTTTAGTTTAT 36003 Query 62709 GAAAATCAAATCGCCCATCT--ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTAC 62765 ||||| || |||| ||| ||||||||||| | ||||| ||| |||| ||| | Sbjct 36004 CAAAATTGTATGTTTTATCTTCATTGACAAACATGTTAAGTGCAATAGAGGCCAAATTGC 36063 Query 62766 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 62825 |||| || ||||||| ||| | || | | ||| ||||| || | ||| || |||| Sbjct 36064 AAACAGCAACCTCATCAGCTGAAGTGTACTCCACTATTTCAGTACACAAATTGCTGCACT 36123 Query 62826 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGA 62885 | || ||||||| ||||| ||| ||||| || ||| |||| || ||||| | || Sbjct 36124 TAATAGTTCCTAGATTTTTTTGGTTACTTTTGCGGTTGCACGAGTCTTTATACAACATAT 36183 Query 62886 ATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 62945 |||| || || ||||| | || | ||||||||| |||||||| | | |||| || | Sbjct 36184 ATGGTGTTCCCGTTTCTACTTGTGCTTCTATAATAGCTTTCCACAGAGCCTGAGCTTTAA 36243 Query 62946 TTATAGATTTGTATCTC--TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTC 63003 | | || | || |||||| |||| ||| | || | | || || || || Sbjct 36244 CTT--GCTTAACAAATCGATTTTCTTTTTCATATTTCTTGTATAGTGCCTCAAATTCTTC 36301 Query 63004 TCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63063 ||||||| || | | || ||||| |||| |||||||| | ||| | | | | Sbjct 36302 TCCCCAACAATCTGCTAAGCCTGGACAGTCATGAGGACACATAAGACTCCAATTTTCATT 36361 Query 63064 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 63123 | || |||| ||||||||| | |||||| ||||| | ||| ||| || ||||| | Sbjct 36362 ACTCTCTACTCTTTTCATAAATAAATCAGGTATCCATAAAGCATAAAAGAGTTCTCTAGC 36421 Query 63124 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63183 || ||| || || || ||||| ||||| ||||| | ||| | | |||||| | ||| Sbjct 36422 TCGTACTTCTTCTTTGCCAGTATTTTTTTTCAGATCTAAGAATTCGAAAATATCTGCATG 36481 Query 63184 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63243 ||| ||||||||||||| || | | ||||||| ||||| || || || ||||||| || Sbjct 36482 CCATGGTTCCAAGTATACTGCAAAAGCTCCAGGACGTTTATTGCCCCCTTGATCTACATA 36541 Query 63244 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT 63303 ||| || || || ||||| |||| |||||| || | || |||||||| |||||| || Sbjct 36542 TCTGGCAGTATTGTTATACACTCGCAACATAGGGACAAGGCCATTGGAGACACCATTTGT 36601 Query 63304 CCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTG---ATAGA--CCTATTCCC 63358 || | ||||| | || |||| | ||| | || || || || || || Sbjct 36602 TCCAGCAATATAAGTGCCTTTGGC-----TCTTATGCAGTGAACATGGACTCCAATACCT 36656 Query 63359 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTA 63418 || || |||||| ||||| || ||| | ||||| || ||||| ||||| || |||||| Sbjct 36657 CCAGCAGATTTAGATATTAAAGCACATTGCTTTAATGTGTCATATATGCCTTCAATACTA 36716 Query 63419 TCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 63478 |||||| |||| || || || || ||| | || | || ||| | || | Sbjct 36717 TCATCCTTCATTGCAACTAAGAAGCATGAAGATAGCTGTGGTCGTGGCGTTGCTGCTGAA 36776 Query 63479 AATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA 63538 ||||| || || || || ||||| ||||||| || |||| ||| || || ||||| Sbjct 36777 AATAATGTCGGGCTGGCATGGGTAAAATATTTTTCCGACAGTAAATTATATGTATCAATT 36836 Query 63539 GCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63597 || | || ||||| || | || ||||||| | |||||||| | |||||| || || Sbjct 36837 GCAGCATCAATATCTTCACCG-TGTATTCCTATAGACACACGCATCAGCATGTGTTGTGG 36895 Query 63598 TCTTTCA 63604 | |||| Sbjct 36896 CCGTTCA 36902 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 63610 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 |||||||||||| ||||||||||| ||| |||||||||||||||||||| ||||| || Sbjct 36990 CTTGTTGTTTATCTTCAACAAGTATGATCGCTCCAAAGTTTTAAAACCAAAGTAGTTATA 37049 Query 63670 TGAAAAGTCTCGTTCGTAAATAATA 63694 | ||| |||| || || | |||| Sbjct 37050 TTTAAAATCTCTGTCATACACAATA 37074 >seq200 Length=575180 Score = 89.7 bits (98), Expect = 7e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011 ||||| || || || | || || ||||| ||||| ||||||||||| || || ||||| Sbjct 474171 TACATCTCTGAGTGCACATTCTCCATGGCTATTTGGAATCCGTAGAAACACCTTGCCTCC 474112 Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071 || | || |||||| | |||| || | | ||||||||| || || |||||| Sbjct 474111 GTCACTTGCACTTCTTGCGAGAATCTCTCAACAAGATTTTCATTGACAATACCGTCAGAT 474052 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 33113 || ||||| || |||| |||||| || || |||| | | ||| Sbjct 474051 GCAGCAAAGAATGCCAGTACATGCTTGATGAAATGTCTCTCG 474010 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 || |||| ||| ||||| ||||| ||||| || || || || |||||||| ||||| | | Sbjct 473531 TTTGATAGATCAACTTCCTCCACGGTCCAGAAAGAAGCTTCGGCCTTTTTGTACATCTCC 473472 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 || || ||| | |||||||| || ||||||||||| Sbjct 473471 CAAATATCAGGGTATTGAATGGGGAAAATAACAAA 473437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633466693331600