Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq44 315 8e-81 >seq44 Length=1464967 Score = 315 bits (348), Expect = 8e-81 Identities = 594/867 (69%), Gaps = 9/867 (1%) Strand=Plus/Minus Query 51575 CCAGCCGCGAGCGTACATCGCCACGCCGACGACGATCTTCTGATTGCGCACGCCCTGTTC 51634 ||| || ||| ||||||| || || |||||||| | ||||| |||| ||||| | Sbjct 1427266 CCATCCACGACCGTACATAGCAACACCGACGACCAGCTTCTTGGGCTGCACTCCCTGAGC 1427207 Query 51635 GAGAAGCGACGACACGGCATAGTCGGTGGTGTACTTTTCGTCGGGGTTCCATTGGGGCGC 51694 | ||| || | || |||| || ||||| | || | ||| ||||| | || || Sbjct 1427206 CAAAAGATACCTAATACCAAAGTCAGTAGTGTAAGTCTCCTTGGGTTTCCACTCAGGAGC 1427147 Query 51695 GAACAGTGTGGTCTGGTAGCCCAGATCGGTGTTGGACCACGCACCCTTGAAATCGTAGTT 51754 | | | | |||||||| ||| ||| | |||||||| || |||||||| |||||| | Sbjct 1427146 GTATAACGAGGTCTGGTGGCCAAGAGTGTCATTGGACCAGGCTCCCTTGAAGTCGTAGCT 1427087 Query 51755 CATGAGGAAAATGTAATCCAACTGCGTCTGCGCCCGAGCGTAGTCGACGACTTGAATTTT 51814 ||| | |||||| | |||| | |||| || ||||| ||| || ||||| || Sbjct 1427086 CATCACGAAAATATGGTCCATGTAGTTCTGGGCTTCCTTGTAGTTGACAACCTGAATCTT 1427027 Query 51815 ATCGTAGCCCGCGCTGATGGCGCTGGTCAACAGGTACGAACGGTTCG-TGGCGGCGCTCA 51873 || | || || |||||||| |||| | ||| | | || | | ||| | Sbjct 1427026 GTCCCACCCAGCACTGATGGCAGAAGTCAGCTCGTATTT-CTTTCCGGTCTCAGCGGATA 1426968 Query 51874 ACTCGTCGAGCATGTCGCGCAGCTCGGTCAAAAGCGTCACGTACGTCGCACCATCGCGAT 51933 ||||||| | ||||| | ||||| ||| || |||||||| | ||||||| | Sbjct 1426967 ACTCGTCCAACATGTGTCTAAGCTCCTTCATGAGTGTCACGTATATTTCACCATCTTTA- 1426909 Query 51934 CGGGATCGCCCAGGTCGGGATTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGA 51993 ||| | || ||||| || || || || || || || || |||||||| || | || | Sbjct 1426908 --GGACCACCAAGGTCAGGGTTAGCTCCCTTACCTCCAGGGAACTCCCAATCAATATCAA 1426851 Query 51994 CTCCGTCGAAGAACTTCCAAGTCAGCAGAAACTCGCGAACCGATTCGACGAAG--GTTGC 52051 | || |||||||| ||||| ||| | | ||| || || || | |||||| || | Sbjct 1426850 CGCCATCGAAGAATTTCCAGGTCTGTAAAAAGTCCTTGACTGAACCAACGAAGCGGTCTC 1426791 Query 52052 GCGTTTGCTCGCGTCGTGCAGGAAGAAGAACGGATCGGACAGCGTCCAACCGCCGATCGA 52111 | || || ||| | | ||||||||| ||||| | ||| |||||||| |||| || Sbjct 1426790 TC-TTAACTTT-GTCATCGAAGAAGAAGAAGGGATCAGCCAGGGTCCAACCACCGACTGA 1426733 Query 52112 GGGCAGAATCTTGAGCGAAGGATTGGCCCGTTTGGCCGCCATCAGCTGTCCAAAGTTTCC 52171 || |||||||| || ||| |||||| |||| | |||||| || || || || || Sbjct 1426732 AGGAAGAATCTTCAGGTCAGGTTTGGCCTGTTTCAACATCATCAGTTGACCGAAATTGCC 1426673 Query 52172 CTTGTACGGATCGTTCCAGGCCGAGACGCCTTTCTGCGGTTTCTGCAGCGCCGCCCAGGG 52231 |||||| || || ||||||| ||| | ||| ||||| || || |||| || ||||| || Sbjct 1426672 CTTGTAAGGCTCATTCCAGGACGATAAGCCCTTCTGTGGCTTTTGCAAAGCAGCCCAAGG 1426613 Query 52232 ATCGTGAATCGTCACCTTAAAGTCCGACCTGCCCACGCACGACCGTTGCAACGCTTCGAA 52291 |||||| || | || || ||||| || || ||| || ||||||| |||| ||| Sbjct 1426612 ATCGTGGATGGATACTTTGAAGTCTTCCCGACCGCTGCAGGAGCGTTGCAGTGCTTGGAA 1426553 Query 52292 ACTGTTGTCGATCGGTTTCAGGCTGTCGTTGATGCCGTCGCCTCCGCACATGGGAATGAA 52351 ||| || || |||| |||||||| ||||| || || ||||| || || ||||| Sbjct 1426552 ACTACCCTCAATTTCCTTCAAACTGTCGTTAATGCCATCACCGCCGCAAATCGGGATGAA 1426493 Query 52352 GCCGTACAGCAGATGCGACAGGTTCGGCAACGGCACCAGATCTACGGGAAAGTTGCGCAA 52411 |||||||| | || | |||||| || | || || |||||||| || || ||| Sbjct 1426492 GCCGTACAATAAGTGGGTCAGGTTGGGAACGGGAACTTTGTCTACGGGGAACTTTCGCGG 1426433 Query 52412 GTAAACGCCCCATTCGACAAAGTAGGC 52438 ||| ||||||||||| || ||||| || Sbjct 1426432 GTACACGCCCCATTCTACGAAGTACGC 1426406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537462946045160