Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq356 98.7 2e-17 seq691 84.2 5e-13 >seq356 Length=320338 Score = 98.7 bits (108), Expect = 2e-17 Identities = 366/568 (64%), Gaps = 7/568 (1%) Strand=Plus/Plus Query 2956 GAAATCAAGTATTATGGCTATTACCAATGGGTTTTCATCGTATTGTTCATCCAAGCGGTG 3015 ||| |||||||| || |||||||| ||||| | | | || | ||| |||||||| | Sbjct 138417 GAAGTCAAGTATCATAAATATTACCAGTGGGTGTGCTTTGTGCTATTCTTCCAAGCGATC 138476 Query 3016 TTCTTCTCCATTCCGCAGTACATCTGGAAGGTATGTGAAGGAGGGAAAATGAAGACATTG 3075 | |||| | | |||| ||| | |||||| || || || || || |||| || Sbjct 138477 CTGTTCTACGTGCCGCGCTACCTGTGGAAGACCTGGGAGGGCGGCCGCATCAAGATGTTA 138536 Query 3076 GCTCATGATCTGACTTCACCGTTCCTGAGCAAAGAGTGCATCACAGA--GAAGGTGGATC 3133 | | || || | | ||| || | || | || |||| | || | | | | || Sbjct 138537 GTGCTCGACCTCAACTGTCCGGTCGTTGGCGAGGATTGCAAAGCGGACCGTAAGAAGCTC 138596 Query 3134 ATTTGATGGATTATTTTTTCATGCAGCTGCACGCGCAAAACTCTTACGCCTACAAATACT 3193 | | ||||| || | || | | || || | ||||||| |||||| | | || | Sbjct 138597 CTCG--TCGATTACTTCTACACGAATCTTAACACACAAAACTTTTACGCGTTCCGATTTT 138654 Query 3194 TTGGCTGCGAGCTGCTAAACTTTGTCAACGTTGTCGCACAGATATGCTTCATGAATGCCT 3253 | || ||| | | ||||| | ||||| |||| |||||||| ||||||| | || Sbjct 138655 TCATATGTGAGGTTTTGAACTTCATAAACGTAGTCGGACAGATATTCTTCATGGACTTCT 138714 Query 3254 TTATAGGCGAAGACTTTTTGTTGTACGGAATCTATGTTACCTTCTTCAACCAGGAAGCCG 3313 | | | || || || | |||||| | | || | |||| || | | | Sbjct 138715 TCCTCGACGGTGAGTTCTCCACGTACGGCAGTGACGTGGTCAGTTTCACTGAG-ATGGAG 138773 Query 3314 CCCATCCGAACATGACGAACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTT 3373 ||| || | || ||| ||| ||| ||| || ||||| | | | || ||||| | Sbjct 138774 CCCGAG-GAGCGTGTCGA-CCCGATGGCGCGCGTGTTTCCTAAAGTGACCAAGTGTACCT 138831 Query 3374 TTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGG 3433 | |||||||||||||| || ||| | || | || | ||| ||||| || | | ||| Sbjct 138832 TCCACAAATACGGTCCCTCCGGCACGGTGCAGAAGTTCGACGGACTGTGTGTGTTGCCGC 138891 Query 3434 AGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCA 3493 |||| | || |||||||| |||||| | |||||||||||||||||| | || | | Sbjct 138892 TGAACATCGTTAACGAGAAAATCTACGTGTTCCTCTGGTTCTGGTTCATGATCCTGTCAA 138951 Query 3494 TCATCAGCGGTATCGTTGTTCTGTACCG 3521 || | || |||||| | |||||||| Sbjct 138952 TCCTGAGTGGTATCTCGCTGCTGTACCG 138979 >seq691 Length=100932 Score = 84.2 bits (92), Expect = 5e-13 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 3410 ACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCT 3469 |||| | ||||||||||| ||| ||||||||||||||||| ||||| ||||||||| Sbjct 17884 ACGACGCGCTCTGCATCCTGCCGCTCAACGTGGTCAACGAGAAAATCTATGTTTTCCTCT 17825 Query 3470 GGTTCTGGTTC 3480 ||||||||||| Sbjct 17824 GGTTCTGGTTC 17814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12477151108500