Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq36 150 4e-31 seq158 136 9e-27 >seq36 Length=1647457 Score = 150 bits (166), Expect = 4e-31 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || || |||| || || || ||||| ||||| || | | Sbjct 455144 CCACCGCGCAGACGGAGCACCAGGTGAAGAGTTGACTCCTTCTGGATGTTATAATCTGAG 455085 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||||||||| ||||| || |||||||| ||||| || ||||||| Sbjct 455084 AGGGTGCGGCCGTCTTCTAATTGCTTTCCAGCAAAGATCAGTCGCTGCTG---ATCTGGG 455028 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||| || ||||| ||||| ||||| || |||| || || || Sbjct 455027 GGAATACCTTCCTTATCTTGAATTTTAGCTTTGACGTTCTCAATAGTGTCTGACGGCTCA 454968 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||| || || || |||| || || ||||| |||||||| Sbjct 454967 ACTTCGAGAGTGATGGTTTTACCAGTCAAGGTTTTTACGAAAATCTGCAT 454918 Score = 138 bits (152), Expect = 3e-27 Identities = 170/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||||||||| ||||| | ||| | ||| ||||| || || || || || | Sbjct 937290 TCCACCGCGGAGTCTGAGTACTAAATGCAGAGTGGACTCTTTCTGAATGTTGTAATCTGA 937349 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 || ||||| ||||| || | |||||||| || ||||| || ||||| || |||| Sbjct 937350 CAGAGTGCGGCCGTCCTCAAGCTGTTTTCCGGCAAAGATAAGTCGCTGCTG---ATCTGG 937406 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || ||||| |||||||||||||| ||||| || || || || | || | ||| Sbjct 937407 AGGAATGCCTTCCTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCCGATGGTTC 937466 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| || || || ||||| |||||||| || || ||||| Sbjct 937467 CACTTCCAGTGTGATTGTTTTGCCAGTCAGCGTCTTGACAAAAATTTGCAT 937517 Score = 134 bits (148), Expect = 3e-26 Identities = 171/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || | |||| ||| ||| || || || || ||||| | Sbjct 937519 CCACCGCGGAGGCGGAGCACCAAGTGAAGTGTGGATTCCTTCTGAATGTTGTAGTCTGAT 937578 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || |||||||| || ||||| || || || |||||||| || |||| Sbjct 937579 AGAGTGCGCCCATCTTCTAACTGCTTTCCGGCAAAAATGAGACGCTGCTG---ATCTGGA 937635 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || |||||||| || |||||||| || ||||| ||||| |||| || | || Sbjct 937636 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCACATTTTCAATAGTGTCTGAAGGCTCA 937695 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| | ||||| || ||||| || | |||||| ||||| ||||||||| || Sbjct 937696 ACTTCCAAAGTGATAGTTTTCCCAGTTAAAGTCTTTACGAAGATCTGCATTTTG 937749 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| |||| ||||| | ||| | || ||| ||||||||||| ||||||| | Sbjct 935536 CCGCCGCGAAGTCGTAGTACTAAATGCAAAGTAGATTCCTTTTGGATATTGTAGTCGGAG 935595 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || || ||||| || ||||| ||| || Sbjct 935596 AGAGTACGGCCGTCCTCGAGCTGCTTACCGGCAAAGATAAGTCGCTGCTGATCCGGAGGA 935655 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| ||||| || || || || || || | || | || ||| Sbjct 935656 ATGCCTTCCTTGTCCTGAATTTTGGCCTTAACATTCTCAATTGTGTCAGAAGGCTCCACT 935715 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| || |||||||| ||||| |||||||| ||||| Sbjct 935716 TCAAGTGTGATCGTTTTACCGGTCAGCGTCTTAACGAATATTTGCAT 935762 >seq158 Length=707457 Score = 136 bits (150), Expect = 9e-27 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 || ||||| || | |||| ||| |||||| |||||||| || || | || || || Sbjct 607294 AGCCTAAGCACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGACAGAGTACGG 607235 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||| || || || || |||||||| || |||||||| ||||| |||||| Sbjct 607234 CCATCTTCCAACTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCCGGAGGGATACCTTCT 607175 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 ||||| ||||| || || ||||| ||||| || | || | || || || || ||| Sbjct 607174 TTATCTTGGATCTTAGCCTTCACATTTTCGATGGTGTCTGAAGCCTCCACCTCAAGGGTG 607115 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTCT 288484 || |||||||| || || || ||||||||||||||||| |||| |||| Sbjct 607114 ATGGTCTTCCCCGTTAGGGTTTTGACGAATATCTGCAT--TGTTGTTCT 607068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179338948985538