Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq616 109 7e-19 seq25 82.4 9e-11 >seq616 Length=113079 Score = 109 bits (120), Expect = 7e-19 Identities = 509/792 (64%), Gaps = 32/792 (4%) Strand=Plus/Plus Query 115836 CTTCT-TGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGC 115894 ||||| ||||||| | || || | ||| ||||| ||| ||||| | || || Sbjct 35452 CTTCTGTGAGATCACGTAATAGATGGTGATTAACAACTTGAAATTCACCTGATAGAACGC 35511 Query 115895 GTCTCAGATAGATGTTGGTCGTGTATGGCT-CAAAGCACTCATTGTTACCCAAGATTTGG 115953 ||||| |||| || |||| || ||||| | |||| ||||||| || || | ||||| Sbjct 35512 GTCTCTGATATATATTGGAGGT-TATGGGTTCAAATGACTCATTATTGCCAAGAATTTGA 35570 Query 115954 GCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTA 116013 ||||| || |||||||||||||| || | | ||| ||| | || || | Sbjct 35571 GCTGTAGATGCTGTGGGCATGGGAGCTACTAAAAGTGAGTTTCTAAGGCCATGTTTTGCA 35630 Query 116014 ATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTCCCACATA 116070 || ||| || | ||| |||||| | ||| || ||| | | ||||||| Sbjct 35631 ATTTTTTCTTTCAAGGCAGTCCAGTCCCACAAGTT-AG--TTGGAGTCTTATTCCACATA 35687 Query 116071 TCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCA 116130 || | || | || |||||| ||| || || ||| | || ||||| || | Sbjct 35688 TCGTATTGTAAAATTCCTTGGCTCGCCGGACTGCCTTCATAAGTTTCATAGACTCCATAT 35747 Query 116131 ACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGA 116190 || || |||| |||| || || || ||| ||| ||| ||||| ||||| || | Sbjct 35748 TTTTCGGCTAATTGACAGCTTGCTTCAAGTGCTCCGTAATAAATTGTTTCAAATATTTGT 35807 Query 116191 GCATTCATTGCCTT--GGCCTCGTCGGAATCAAACGCGAGACGGCACAA-AATAAATACA 116247 ||| | || || |||| || ||| | | | ||| || || ||||||| Sbjct 35808 TGATTTA--GCTTTATGGCCGGTTCACTATCGTATGGAATACG-CATAAGAATAAATGTG 35864 Query 116248 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 116307 || || | ||||| || || | |||||||| | ||||||||||| || || ||| Sbjct 35865 TCTGCTAATCCTTGCACTCCTATACCAATTGGTCTGTGTCTCATATTGGATGTTTTAGCT 35924 Query 116308 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 116367 || || ||| |||| || |||| |||| ||||| | || | | ||| Sbjct 35925 TCAGGAACTGGGTAATAATTAACTTCAATAATTTTATTAAGATTCTGTGTTATGATTTTT 35984 Query 116368 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT---CTTCATTGACATACTTA 116424 || | ||| | || || ||||||| || || | ||||||||||| || | Sbjct 35985 GTAACTTCTTTTAGTTT------ATCAAAATTGTATGTTTTATCTTCATTGACAAACATG 36038 Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC--CTTATCAGTGTACTCTA 116482 ||| || || || |||| ||| || |||| |||||| || | ||||||||| | Sbjct 36039 TTAAGTGCAATAGAGGCCAAATTGCAAACAGCAACCTCATCAGCTGA--AGTGTACTCCA 36096 Query 116483 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT- 116541 ||||| ||||||||||| | |||||| || || | || ||||| || ||||| Sbjct 36097 CTATTTCAGTACACAAATTGCTGCACTTAATAGTTCCTAGATTTTTTTGGTT--ACTTTT 36154 Query 116542 -GTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 116600 ||| |||| || || || | ||||||||| || ||||| || ||| | | | Sbjct 36155 GCGGTTGCACGAGTCTTTATACAACATATATGGTGTTCCCGTTTCTACTTGTGCTTCTAT 36214 Query 116601 AATAGCCTTCCA 116612 |||||| ||||| Sbjct 36215 AATAGCTTTCCA 36226 >seq25 Length=1814138 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 12874 TACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTT 12933 ||||||| ||||| ||||||||||| || | ||| || ||| | || || || | Sbjct 1195825 TACCGACTGCGTCTATTTCGTCAATAAATAGGATGCAGGGTGCGTGTTTGCGCGCCATGG 1195766 Query 12934 CAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGG 12993 || || || ||||||||| || ||||||||| ||||||||||||| || | | | Sbjct 1195765 AGAACATGTCACGCACTCTCGAGGGACCGACACCTACAAACATCTCCAAGAACTCTGAGC 1195706 Query 12994 CGGA-ACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 13052 | || ||| | ||||| ||||| || | ||| || || | ||| ||| || | ||| Sbjct 1195705 CTGAGACAGT-AATGAATGGGACATTCGCTTCTCCAGCTGTCGCTTTGGCAAGTAAGGTT 1195647 Query 13053 TTCCCCGTCCCTGG 13066 || || || || || Sbjct 1195646 TTACCGGTTCCAGG 1195633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613347143640360