Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq44 179 2e-40 seq36 107 1e-18 >seq44 Length=1464967 Score = 179 bits (198), Expect = 2e-40 Identities = 605/925 (65%), Gaps = 29/925 (3%) Strand=Plus/Minus Query 5653 GTCGTGCACTCCGGACCACCCACGACCGTACATGGCTACACCCACAATTAGCTTCTTCGA 5712 ||| || ||||| | ||| |||||||||||||| || ||||| || | |||||||| | Sbjct 1427281 GTCATGGACTCCAGTCCATCCACGACCGTACATAGCAACACCGACGACCAGCTTCTTGGG 1427222 Query 5713 TTCGACGCTCTGATTTAACAGACGCTTGATTGAAAAATCTGTCGTGTATGTCTCGCCTGG 5772 | || | |||| || ||| | | || ||| || || ||||| ||||| | ||| Sbjct 1427221 CTGCACTCCCTGAGCCAAAAGATACCTAATACCAAAGTCAGTAGTGTAAGTCTC-CTTGG 1427163 Query 5773 G-TTCCACGATGGAGCGTACAGAGGTGTCTGGTGTCCCAGATCCGTTA-ACGACCAGGCA 5830 | |||||| |||||||| | | |||||||| || ||| || | |||||||| Sbjct 1427162 GTTTCCACTCAGGAGCGTATAACGAGGTCTGGTGGCCAAGA-GTGTCATTGGACCAGGCT 1427104 Query 5831 CCCTTGTAGTCGTACGTCATAACAAAGATGTGATCAAGATACCTTTGTGCGCTGGC--GT 5888 |||||| ||||||| |||| || || || || || | || || || ||| | || Sbjct 1427103 CCCTTGAAGTCGTAGCTCATCACGAAAATATGGTCCATGTA--GTTCTGGGCTTCCTTGT 1427046 Query 5889 AGTCGACAACGTCGATCTTGTCATGTCCCGCGCCGATAGCACTTGTCA-ATTGTAACCGT 5947 ||| |||||| | |||||||| || || | ||| ||| |||| | ||| | Sbjct 1427045 AGTTGACAACCTGAATCTTGTCCCACCCAGCACTGATGGCAGAAGTCAGCTCGTATTTCT 1426986 Query 5948 TTACCCCGCTTCTCGCCCAACTCGTCAAGCATCACGCGAAGTTCCCGCAACAAAAGAGTG 6007 || || || || |||||||| | ||| | ||| ||| | | ||||| Sbjct 1426985 TT-CCGGTCTCAGCGGATAACTCGTCCAACATGTGTCTAAGCTCCTTC-----ATGAGTG 1426932 Query 6008 T-ACGTATTGCGGTCCA-CCTCGGCATTACCCAACACAGGATTAGCACCCTTTCCACCCG 6065 | |||||| ||| | | | | ||| | |||| ||||| ||||| || || | Sbjct 1426931 TCACGTATATTTCACCATCTTTAGGACCACCAAGGTCAGGGTTAGCTCCCTTACCTCCAG 1426872 Query 6066 GAAACTCCCAGTCAATGTCCACTCCGTCAAAGAACTTCCATGTCTCCAGAAACTCGCGGA 6125 | |||||||| ||||| || || || || ||||| ||||| |||| | ||| || || Sbjct 1426871 GGAACTCCCAATCAATATCAACGCCATCGAAGAATTTCCAGGTCTGTAAAAAGTCCTTGA 1426812 Query 6126 C---ACTTGTGA--CGAACAC-CTTACGTTTGGAGTCATCGTTCATAAAATAAAACGGAT 6179 | || || || | | |||| ||| ||||||| | || | || |||| Sbjct 1426811 CTGAACCAACGAAGCGGTCTCTCTTAACTTT---GTCATCG---AAGAAGAAGAAGGGAT 1426758 Query 6180 CGCTCAACGTCCACCCCCCTATGGATGGTAGGACTGTCAACGAAGGGTTGTGACGTTTGA 6239 | || ||||| || || | || || || | ||| ||| ||| |||| | Sbjct 1426757 CAGCCAGGGTCCAACCACCGACTGAAGGAAGAATCTTCAGGTCAGGTTTGGCCTGTTTCA 1426698 Query 6240 TGGCCATCAGCTGGCCAAAGTTACCCTTGTACGCTTCGTTGTACGCCTCAACGCCTTTCT 6299 |||||| || || || || |||||||| | || || | | | | ||| |||| Sbjct 1426697 ACATCATCAGTTGACCGAAATTGCCCTTGTAAGGCTCATTCCAGGACGATAAGCCCTTCT 1426638 Query 6300 GTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTCACCTTGAAGTCATCGCGACCAG 6359 |||| |||||||| || ||||| ||||| || || |||||||| || ||||| Sbjct 1426637 GTGGCTTTTGCAAAGCAGCCCAAGGATCGTGGATGGATACTTTGAAGTCTTCCCGACCGC 1426578 Query 6360 CGCAGGATTTCTGTAGCGCCTCAAAGGAATTGGGAATCTGCTTGAGGGCGTCGTTTATGC 6419 |||||| || || || | || | ||| | ||| | |||||| |||| Sbjct 1426577 TGCAGGAGCGTTGCAGTGCTTGGAAACTACCCTCAATTTCCTTCAAACTGTCGTTAATGC 1426518 Query 6420 CGTTACCACCACAAATTGGAATGAACCCGTACAGCAGGTGCGTCAGATTAGGTATTGGTA 6479 | | ||| || ||||| || ||||| ||||||| | ||| ||||| || || | || | Sbjct 1426517 CATCACCGCCGCAAATCGGGATGAAGCCGTACAATAAGTGGGTCAGGTTGGGAACGGGAA 1426458 Query 6480 CCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCACTCCACGAAATACGCACCGACGA 6539 | ||||| | ||| |||| || ||||| ||||| || ||||| ||||||||||| | Sbjct 1426457 CTTTGTCTACGGGGAACTTTCGCGGGTACACGCCCCATTCTACGAAGTACGCACCGACAA 1426398 Query 6540 CCCTATCGGTTGTCCTCCTGAATGG 6564 | || | | ||| | ||||||| Sbjct 1426397 CTTTACCAGAGGTCTGCTTGAATGG 1426373 >seq36 Length=1647457 Score = 107 bits (118), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| || |||||||| || || |||||| | || |||| || Sbjct 455810 ACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCCTCG 455751 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| ||||| || || | ||| ||||||||| | || | ||||||||||| Sbjct 455750 AGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 455691 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | ||| | || || || | || || |||| Sbjct 455690 ATCTTAGCCTTTAC--ATTCTCAATAGTGTCAGATGGTTCCACTTCCAGTGTAATAGTTT 455633 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| |||||||| || || |||||||||||| Sbjct 455632 TTCCAGTGAGAGTTTTAACGAAGATCTGCATA 455601 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| |||| ||| ||||||||||| ||||| || || | || |||| || Sbjct 937537 ACCAAGTGAAGTGTGGATTCCTTCTGAATGTTGTAGTCTGATAGAGTGCGCCCATCTTCT 937596 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||||||||| || || || ||||| ||| | || | || || ||||| Sbjct 937597 AACTGCTTTCCGGCAAAAATGAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGG 937656 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || || || | | || | || | |||||| || | || || ||||| Sbjct 937657 ATTTTGGCCTTCACATTTTCAATAGTGTCTGAAGGCTCAACTTCCAAAGTGATAGTTTTC 937716 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || | |||||| || ||||||||||| || Sbjct 937717 CCAGTTAAAGTCTTTACGAAGATCTGCATTTT 937748 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||| ||||| ||||| |||||| | || |||| || Sbjct 455354 ACCAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCCTCA 455295 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| ||||| || || | || || |||||| | || | || || ||||| Sbjct 455294 AGCTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGAATGCCTTCTTTGTCTTGG 455235 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || || | | || | || | |||||| || | ||| || ||||| Sbjct 455234 ATCTTGGCCTTTACATTTTCAATAGTGTCTGAAGGCTCAACCTCAAGGGTGATTGTTTTG 455175 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| ||||||||||||||| Sbjct 455174 CCAGTAAGGGTCTTGACAAAGATCTGCATA 455145 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||| ||||| ||||| || ||| | || |||| || Sbjct 456263 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 456204 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || || || || | ||| ||||||||| | || | || || ||||| Sbjct 456203 AGCTGTTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGG 456144 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | ||| | |||||| || | || || |||| Sbjct 456143 ATCTTTGCCTTTAC--ATTCTCAATGGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTT 456086 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || ||||| ||||||||||||||| Sbjct 456085 TGCCAGTAAGGGTCTTGACAAAGATCTGCATA 456054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324551024472888