Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq616 556 1e-153 seq1214 131 2e-25 >seq616 Length=113079 Score = 556 bits (616), Expect = 1e-153 Identities = 1206/1792 (67%), Gaps = 40/1792 (2%) Strand=Plus/Plus Query 46973 tttttCCACAGTAAACTTAATTG-GATTACTCGCTGATTTTGTTCGTAAATAATACATAC 47031 ||| || |||||||| | || | | || || || | ||| || |||| ||||||||| | Sbjct 35132 TTTGTCTACAGTAAATTGTATAGCGTTTGCT-GCAGGTTTAGTACGTAGATAATACATTC 35190 Query 47032 CAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAG 47091 | || || ||||| | |||| ||| ||||| ||| ||||| || |||| ||| Sbjct 35191 CTGTTTTCAAACCCATTTTCCAGGAATAAAAATGAATAGAAGTTAGCTTCCCATAATTAG 35250 Query 47092 GTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTG 47151 |||||| || |||||| || | ||||| || ||||| |||||||| || || || |||| Sbjct 35251 GTTCTGCAACATGAATGTTGAATGATTGGCTTTGATCTATAAATGCTCCCCTGTCTGCTG 35310 Query 47152 CCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211 |||| | | | | | | | || ||||| || ||||| || | | | |||| | Sbjct 35311 CCATTTGAATAGTGGTCTTAACAGAAATTTCCCAAACAGTTTTGTACAAATCTCTAATTT 35370 Query 47212 CTTCTGGGAGATTAGT---AT--TTTGAATAGATCCTCCgttttctataattttgttttt 47266 ||| | ||| |||| || |||| || || || ||| | || || |||||| Sbjct 35371 CTT-TAGGA-ATTACCTCAATGCTTTGTATGGAGCCATTGTTGTGGATGATAAGGTTTTT 35428 Query 47267 taattcatttgaccaaagtt----ttcgttcagttaatgtttttaaAAGATGAGGATTAA 47322 | || | ||| | || ||| | || | | || || ||||| |||||| Sbjct 35429 CATGTCTTCATCCCACAATTCAGCTTCTGTGAGATCACGT----AATAGATGGTGATTAA 35484 Query 47323 CAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGG-TTCT 47381 ||| ||||||||| || ||||| || | | ||||||||| || ||||| ||| Sbjct 35485 CAACTTGAAATTCACCTGATAGAACGCGTCTCTGATATATATTGGAGGT-TATGGGTTCA 35543 Query 47382 ATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAAT 47441 | || |||||||| |||| ||||||||| || |||||||| ||||||| || ||||| Sbjct 35544 AATGACTCATTATTGCCAAGAATTTGAGCTGTAGATGCTGTGGGCATGGGAGCTACTAA- 35602 Query 47442 AAGCTA-TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAG 47500 ||| | ||||| | |||| |||| || | |||| ||||| | Sbjct 35603 AAGTGAGTTTCTAAGGCCATGTTTTGCAATTTTTTCTTTCAAGGCAGTCCAGTCCCACAA 35662 Query 47501 ATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACC 47560 | | |||| |||||| | ||| ||||| | |||||||| || |||| || Sbjct 35663 GTTAGTTGGAGTCTTATTCCACATATCGTATTGTAAAATTCCTTGGCTCGCCGGACTGCC 35722 Query 47561 ATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACT 47620 | ||| |||| ||| || ||| || || | || ||| |||||||| | ||| | Sbjct 35723 TTCATAAGTTTCATAGACTCCATATTTTTCGGCTAATTGACAGCTTGCTTCAAGTGCTCC 35782 Query 47621 ATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATT--CAAAA 47678 ||||| |||||||||||||||| | ||||| || | || | | | | | | | Sbjct 35783 GTAATAAATTGTTTCAAATATTTGTTGATTTAGCTTTATGGC--CGGTTCACTATCGTAT 35840 Query 47679 GGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTA 47738 ||| ||||| ||||| |||||||| || || |||||||||||||| Sbjct 35841 GGAATACGCATAAGAATAAATGTGTCTGCTAATCCTTGCACTCCTATACCAATTGGTCTG 35900 Query 47739 TGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTA 47798 || | |||| || | |||||| || | ||| || | || | || ||||||||| Sbjct 35901 TGTCTCATATTGGATGTTTTAGCTTCAGGAACTGGGTAATAATTAACTTCAATAATTTTA 35960 Query 47799 TTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTA 47858 || ||| || |||| ||| ||||| ||||| | | ||| Sbjct 35961 TTAAGATTCTGTGTTATGATTTTTGTAACTTCTTTTAGTTTATCAAAATTGTATGTTTTA 36020 Query 47859 TTTATA---ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTT 47915 | | | |||||| | |||||||| ||||| || | ||| || ||||| ||||||| Sbjct 36021 TCTTCATTGACAAACATGTTAAGTGCAATAGAGGCCAAATTGCAAACAGCAACCTCATCA 36080 Query 47916 GGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTT 47975 | ||| || | | |||||||| ||| | ||| | || || ||||| || | |||| Sbjct 36081 GCTGAAGTGTACTCCACTATTTCAGTACACAAATTGCTGCACTTAATAGTTCCTAGATTT 36140 Query 47976 TGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCT 48035 | || ||| | ||| || | ||| || || | |||| | |||||||| |||||| Sbjct 36141 TTTTGGTTACTTTTGCGGTTGCACGAGTCTTTATACAACATATATGGTGTTCCCGTTTCT 36200 Query 48036 ATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGC---T 48092 | || | ||| || |||| |||||| | || | ||| |||| | ||| || | | Sbjct 36201 ACTTGTGCTTCTATAATAGCTTTCCACAGAGCCTGAGC-TTTA-ACTTGCT-TAACAAAT 36257 Query 48093 TTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT-C 48151 ||| || | ||| ||||| | |||| ||||||||| || || | ||| | | | Sbjct 36258 CGATTTTCTTTTTCATATTTCTTGTATAGTGCCTCAAATTCTTCTCCCCA-ACAATCTGC 36316 Query 48152 TAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGT 48211 ||| || ||||| |||| ||||||||| | ||||| |||| | | | |||||| | Sbjct 36317 TAAGCCTGGACAGTCATGAGGACACATAAGACTCCAATTTTCATTACTCTCTACTCTTTT 36376 Query 48212 CATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATT 48271 |||||||| ||| |||||||| | ||| ||| | || |||| || || |||||| || Sbjct 36377 CATAAATAAATCAGGTATCCATAAAGCATAAAAGAGTTCTCTAGCTCGTACTTCTTCTTT 36436 Query 48272 GCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 |||| |||| |||| || || | || || | ||||| |||||||||||||| || || Sbjct 36437 GCCAGTATTTTTTTTCAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCCAAGTA 36496 Query 48332 TATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTT 48391 || ||| | | || || |||||||| || |||||||||| |||||||||||||||||| Sbjct 36497 TACTGCAAAAGCTCCAGGACGTTTATTGCCCCCTTGATCTACATATCTGGCAGTATTGTT 36556 Query 48392 ATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451 ||| |||| ||||| ||||||| ||||| || | |||||| ||||| | ||||||| | Sbjct 36557 ATACACTCGCAACATAGGGACAAGGCCATTGGAGACACCATTTGTTCCAGCAATATAAGT 36616 Query 48452 TCCACTAGCTCTTATATTACTAA-TTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 || | |||||||| || || | | || ||||| || || ||||||||||| Sbjct 36617 GCCTTTGGCTCTTATGCAGTGAACATGGACT-CCAATACCTCCAGCAGATTTAGATATTA 36675 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 |||||| | || | || ||||| || ||||| ||||||||||| |||| | || Sbjct 36676 AAGCACATTGCTTTAATGTGTCATATATGCCTTCAATACTATCATCCTTCATTGCAACTA 36735 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 || || ||| | || || | ||| ||| ||||||||| || |||| Sbjct 36736 AGAAGCATGAAGATAGCTGTGGTCGTGGCGTTGCTGCTGAAAATAATGTCGGGCTGGCAT 36795 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCAT 48689 | |||| |||| || || | || |||||||| ||||| ||| ||| ||||| || Sbjct 36796 GGGTAAAATATTTTTCCGACAGTAAATTATATGTATCAATTGCAGCATCAATATCTTCAC 36855 Query 48690 TGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAA 48741 | ||||| |||||||| |||||||| | ||| | ||| || | |||| ||| Sbjct 36856 CG-TGTATTCCTATAGACACACGCATCAGCATGTGTTGTGGCCGTTCAGCAA 36906 >seq1214 Length=30633 Score = 131 bits (144), Expect = 2e-25 Identities = 249/364 (68%), Gaps = 7/364 (2%) Strand=Plus/Plus Query 136634 ATGACTCC--TATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTA 136691 |||||||| ||||| || |||||||| ||| |||| | |||||||| | ||| | | Sbjct 14257 ATGACTCCCGTATTACCC--ATGTTGGCTGAAGCATGCAAGTCTGTAGAAATGGCAATGA 14314 Query 136692 AAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTC 136751 | || | |||||| || || || | ||||| || |||||||||||| | ||||| || | Sbjct 14315 AGAAATGTCCAAACGGCATGTTCTCTGAAATCAAGTATGACGGAGAAAGAGTACAAGTAC 14374 Query 136752 ACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATA 136811 | || || ||||| | ||| || || || | ||||| || | |||| Sbjct 14375 ATAAAAAAGGAAATGAATTTAAATATTACTCAAGGGCTTTAAAACCAGTGATGGCTCATA 14434 Query 136812 AAGTTGATTATCTTAATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTTATTT 136871 |||| || || |||| || ||| |||| ||||| ||| | | | | ||| |||| Sbjct 14435 AAGTGAATCATTTTAAGGAATATTTACCCAAAGCATTTCCACAAGGAAATGATCTGATTT 14494 Query 136872 TAGATTCAGAAATAGTACTAGTAGATAAAAATAAT---AAACCATTACCATTTGGCAGTT 136928 | ||| |||| || || | || ||| |||| | ||||||||||| ||||||| | Sbjct 14495 TGGATGCAGAGGTATTAATGGTTGATGTTAATACTGGGAAACCATTACCGTTTGGCACAT 14554 Query 136929 TGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGATT 136988 ||||||| || || | |||| ||| ||| | || | ||| | ||||| ||||| | Sbjct 14555 TGGGTATTCACAAGCAATCAGAATTTAAAGATGCGTCTGTCTGTCTGTTTGTGTTTGACT 14614 Query 136989 GTTT 136992 | || Sbjct 14615 GCTT 14618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561962152840440