Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq44 232 5e-56 seq36 154 1e-32 seq158 149 5e-31 >seq44 Length=1464967 Score = 232 bits (256), Expect = 5e-56 Identities = 667/1017 (66%), Gaps = 13/1017 (1%) Strand=Plus/Minus Query 42464 AATCTGTCTATAGTCTACGACGCCATCTTCCCAAGTACCCGAAACTGGACCTGTCGCAAT 42523 ||||| || ||||| || || || || | ||||||||| ||| || || || | Sbjct 1427368 AATCTCCCTGTAGTCGACCACTCCGTCCTGCCAAGTACCTTTAACAGGGCCATCAGCTAC 1427309 Query 42524 ACCCGTGAAGGGATTATTGTTTTGGTAATTGCTTACTCCGGTCCAACCTCGTCCGTACAT 42583 || |||||||| ||| || | ||| | ||||| ||||| || || |||||||| Sbjct 1427308 TCCTGTGAAGGGGATATCGTCCTTGTAGTCATGGACTCCAGTCCATCCACGACCGTACAT 1427249 Query 42584 GGCCACGCCTAAAATTATTTTTTGAGGTTTCACTTTTTGTTTCAAAAGCGTTTGAACGGC 42643 || || || | | | || | || | |||| || |||||| || | Sbjct 1427248 AGCAACACCGACGACCAGCTTCTTGGGCTGCACTCCCTGAGCCAAAAGATACCTAATACC 1427189 Query 42644 ATAATCTGCCGTGTAATGTTCGTTTTCGTTCCATTCGGGAGCATACAGATTTGTTTGATG 42703 | | || | |||||| || || ||||| || ||||| || | || || || Sbjct 1427188 AAAGTCAGTAGTGTAAGTCTCCTTGGGTTTCCACTCAGGAGCGTATAACGAGGTCTGGTG 1427129 Query 42704 GCCCAAATCTGAATTTGACCAAGCACCTTTAAAGTCATAGCTCATTAAAAATATTTTATC 42763 ||| | | ||| ||||| || || || ||||| |||||||| | || || | || Sbjct 1427128 GCCAAGAGTGTCATTGGACCAGGCTCCCTTGAAGTCGTAGCTCATCACGAAAATATGGTC 1427069 Query 42764 CAAATAGTTTTGAGCATCGTTGTAATCGACAATAGCGATTTTGTCGTCTCCCGCACTAAT 42823 || ||||| || || || ||||| | ||||| || ||||| || ||||| || Sbjct 1427068 CATGTAGTTCTGGGCTTCCTTGTAGTTGACAACCTGAATCTTGTCCCACCCAGCACTGAT 1427009 Query 42824 TGCGCTAGTCAATTCGTATTTGCGATTAGTTTCGTTTTCTAGTTCGTCCAGCATGTCGCG 42883 || ||||| |||||||| || || || ||||||| ||||| | Sbjct 1427008 GGCAGAAGTCAGCTCGTATTTCTTTCCGGTCTCAGCGGATAACTCGTCCAACATGTGTCT 1426949 Query 42884 CAATTCTCGTAACAAAACTACATACGTA-AGACCGTCATTTTGAGGATCTCCAATTGTC- 42941 | || | | | | | ||||| | | ||| || |||| | |||| ||| Sbjct 1426948 AAGCTC-CTTCATGAGTGTC---ACGTATATTTCACCATCTTTAGGACCACCAAG-GTCA 1426894 Query 42942 GGATTAGCTCCTTTACCACCGGGAAATTCCCAATCAATATCGACGCCGTCAAAAAATTTC 43001 || |||||||| ||||| || || || |||||||||||||| ||||| || || |||||| Sbjct 1426893 GGGTTAGCTCCCTTACCTCCAGGGAACTCCCAATCAATATCAACGCCATCGAAGAATTTC 1426834 Query 43002 CAAGTGAGCAAAAACTCACGTACTGAATCCACAAATATTTTACGCTTG--TTTG-CATCG 43058 || || | ||||| || |||||| | || || | | ||| |||| ||||| Sbjct 1426833 CAGGTCTGTAAAAAGTCCTTGACTGAACCAACGAAGCGGTCTCTCTTAACTTTGTCATCG 1426774 Query 43059 CTGAAAAAATAAAACGGGTCGGACAATGTCCATCCACCTATCGAAGGTAACACTTTAAGA 43118 ||| || || || || | || ||||| ||||| | ||||| | | || || Sbjct 1426773 AAGAAGAAG---AAGGGATCAGCCAGGGTCCAACCACCGACTGAAGGAAGAATCTTCAGG 1426717 Query 43119 TGAGGGTTAGCTTTTTTGGCTGCCATTAATTGACCAAAGTTGCCTTTGTACGGTTCATTC 43178 | ||| || || | ||| ||| | |||||| || ||||| ||||| || |||||| Sbjct 1426716 TCAGGTTTGGCCTGTTTCAACATCATCAGTTGACCGAAATTGCCCTTGTAAGGCTCATTC 1426657 Query 43179 CACGAGGAAACACCTTTTTGTGGTTTCTGTATAGCCGCCCACGGATCGTGTATGGAAACT 43238 || || || | || || ||||| || || | ||| ||||| |||||||| ||||| ||| Sbjct 1426656 CAGGACGATAAGCCCTTCTGTGGCTTTTGCAAAGCAGCCCAAGGATCGTGGATGGATACT 1426597 Query 43239 TTGAAGTCGCTTCGACCCGCACAAGATTTTTGAAGAGCTTCAAAACTGCCAGGAATAGAT 43298 |||||||| ||||| || || ||| || |||| ||||| || ||| Sbjct 1426596 TTGAAGTCTTCCCGACCGCTGCAGGAGCGTTGCAGTGCTTGGAAACTACCCTCAATTTCC 1426537 Query 43299 TTTAAACTGTCATTAATGCCGTCACCGCCGCATATCGGAATAAATCCGTACAACAAATGA 43358 || |||||||| |||||||| ||||||||||| ||||| || || |||||||| || || Sbjct 1426536 TTCAAACTGTCGTTAATGCCATCACCGCCGCAAATCGGGATGAAGCCGTACAATAAGTGG 1426477 Query 43359 GACAAATTGGGTAAAGGCACTTTGTTGACAGGAAATGAACGACCGTATACGCCCCATTCT 43418 | || ||||| | || ||||||| || || || || ||| |||||||||||| Sbjct 1426476 GTCAGGTTGGGAACGGGAACTTTGTCTACGGGGAACTTTCGCGGGTACACGCCCCATTCT 1426417 Query 43419 ACAAAATAAGCGGCCACGGCTTTATCGGTGCCCAATTCGAAAGGTTTATTGTTTTCT 43475 || || || || | || ||||| | | | | | ||| || ||||| || ||| Sbjct 1426416 ACGAAGTACGCACCGACAACTTTACCAGAGGTCTGCTTGAATGGCTTATTCTTCTCT 1426360 >seq36 Length=1647457 Score = 154 bits (170), Expect = 1e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 |||| |||||||| | |||||||| ||||| |||||||| |||| || ||| | | | Sbjct 935548 CGTAGTACTAAATGCAAAGTAGATTCCTTTTGGATATTGTAGTCGGAGAGAGTACGGCCG 935607 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | |||||||| ||||| || | ||||| ||||| || ||||||||||| || Sbjct 935608 TCCTCGAGCTGCTTACCGGCAAAGATAAGTCGCTGCTGATCCGGAGGAATGCCTTCCTTG 935667 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || |||||||| || ||| | || | |||||||| | ||||||||||| |||| | Sbjct 935668 TCCTGAATTTTGGCCTTAACATTCTCAATTGTGTCAGAAGGCTCCACTTCAAGTGTGATC 935727 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| ||||| | || || || ||||| ||||| Sbjct 935728 GTTTTACCGGTCAGCGTCTTAACGAATATTTGCAT 935762 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || ||||| || || || ||||| || | | ||| | |||| || Sbjct 937537 ACCAAGTGAAGTGTGGATTCCTTCTGAATGTTGTAGTCTGATAGAGTGCGCCCATCTTCT 937596 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || ||||| || | |||||| ||||| || |||||||||||||| ||||| Sbjct 937597 AACTGCTTTCCGGCAAAAATGAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGG 937656 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| |||| | |||||| || | || ||||| | ||||| ||||| Sbjct 937657 ATTTTGGCCTTCACATTTTCAATAGTGTCTGAAGGCTCAACTTCCAAAGTGATAGTTTTC 937716 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||||||| ||||| || |||||||| Sbjct 937717 CCAGTTAAAGTCTTTACGAAGATCTGCAT 937745 Score = 141 bits (156), Expect = 7e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || || || || || ||||| | || || | | | || || |||||| Sbjct 455120 TGAAGAGTTGACTCCTTCTGGATGTTATAATCTGAGAGGGTGCGGCCGTCTTCTAATTGC 455061 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| ||||| ||||| || ||||| ||||| |||||||||||||| Sbjct 455060 TTTCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGAATACCTTCCTTATCTTGAATTTTA 455001 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| || | || | |||||| |||| || ||||| ||||||| ||||| || || Sbjct 455000 GCTTTGACGTTCTCAATAGTGTCTGACGGCTCAACTTCGAGAGTGATGGTTTTACCAGTC 454941 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || |||||||| || |||||||| Sbjct 454940 AAGGTTTTTACGAAAATCTGCAT 454918 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 |||||| || | | ||| | || | ||||| ||||| || || || || ||||| || Sbjct 456285 ATTTCCACCGCGAAGACGAAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTC 456226 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 || || || | | |||| || | || || || || || ||||| ||||| || || || Sbjct 456225 GGAGAGGGTGCGGCCATCCTCGAGCTGTTTGCCAGCGAAGATCAATCGCTGCTGGTCTGG 456166 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 |||||||||||||| ||||| || ||| |||||| | || | |||||||| | || Sbjct 456165 GGGAATGCCTTCTTTGTCTTGGATCTTTGCCTTTACATTCTCAATGGTGTCAGAAGGCTC 456106 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||||||| | |||||||| || | || || ||||| |||||||| Sbjct 456105 AACTTCAAGAGTAATAGTTTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 456055 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| ||||| ||||| || |||||||| | | || | | |||| || Sbjct 455582 ACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCCTCA 455523 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || || ||||| ||||| ||||| || || || |||||||||||||| ||||| Sbjct 455522 AGCTGTTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGG 455463 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| || ||| | || | |||||| || | || || ||||| |||| ||||| Sbjct 455462 ATCTTTGCCTTAACATTCTCGATAGTGTCTGAAGGCTCAACCTCAAGGGTGATGGTTTTA 455403 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||| ||||| |||||||| Sbjct 455402 CCTGTGAGGGTTTTGACAAAGATCTGCAT 455374 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || || || || ||||| |||| | || | | |||| || | || Sbjct 455348 TGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTGT 455289 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||||||||||||| || || |||||||||||||| ||||| || || Sbjct 455288 TTGCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGAATGCCTTCTTTGTCTTGGATCTTG 455229 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| |||| | |||||| || | || || ||||| |||| |||||||| || Sbjct 455228 GCCTTTACATTTTCAATAGTGTCTGAAGGCTCAACCTCAAGGGTGATTGTTTTGCCAGTA 455169 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 455168 AGGGTCTTGACAAAGATCTGCAT 455146 Score = 125 bits (138), Expect = 6e-24 Identities = 151/203 (74%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || ||||| || || ||||| || | | || | | |||| || | || Sbjct 456029 TGAAGAGTTGACTCTTTCTGGATGTTGTAGTCTGAAAGGGTGCGGCCATCCTCAAGCTGT 455970 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||| ||||| || || || |||||||||||||| ||||| || ||| Sbjct 455969 TTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGGATCTTT 455910 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| |||| |||||||||| | ||||||||| || || | ||||| || || Sbjct 455909 GCCTTTACA--TTCT-CAGTGTCAGATGGTTCCACTTCCAGTGTAATTGTTTTTCCAGTG 455853 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | |||||| || || |||||||| Sbjct 455852 AGAGTTTTAACGAAGATCTGCAT 455830 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| || || || ||||| || || |||||||| | | ||| | | | || || Sbjct 937309 ACTAAATGCAGAGTGGACTCTTTCTGAATGTTGTAATCTGACAGAGTGCGGCCGTCCTCA 937368 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || || ||||| || | ||||| ||||| || ||||||||||| ||||| || Sbjct 937369 AGCTGTTTTCCGGCAAAGATAAGTCGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGG 937428 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| | || | ||||| || | ||||||||| || |||| |||||| Sbjct 937429 ATTTTAGCTTTAACATTCTCAATTGTGTCCGATGGTTCCACTTCCAGTGTGATTGTTTTG 937488 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| || ||||| Sbjct 937489 CCAGTCAGCGTCTTGACAAAAATTTGCAT 937517 >seq158 Length=707457 Score = 149 bits (164), Expect = 5e-31 Identities = 178/238 (75%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 101238 CATTT-CCTCCTCTTAAACGTAAA-ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTA 101295 ||||| |||||||| || | ||| || || ||||| || |||||||| || |||||||| Sbjct 607309 CATTTACCTCCTCT-AAGCCTAAGCACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTA 607251 Query 101296 ATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATC 101355 ||| | | ||| | | |||| ||||| ||||| || || || || | |||||||| || Sbjct 607250 ATCAGACAGAGTACGGCCATCTTCCAACTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTC 607191 Query 101356 GGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGT 101415 || || || |||||||||||||| || || || ||| |||| | ||||| || | Sbjct 607190 CGGAGGGATACCTTCTTTATCTTGGATCTTAGCCTTCACATTTTCGATGGTGTCTGAAGC 607131 Query 101416 TTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 ||||| ||||| |||| || || || |||| ||||| || ||||||||||| ||| Sbjct 607130 CTCCACCTCAAGGGTGATGGTCTTCCCCGTTAGGGTTTTGACGAATATCTGCATTGTT 607073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396177600520947