Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq116 132 4e-26 seq36 116 3e-21 seq158 113 3e-20 >seq116 Length=882076 Score = 132 bits (146), Expect = 4e-26 Identities = 177/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 7827 GCGTCTGCTCACGTTCAAGGACTGGCCGAAGAGTATAAAGCAGAAACCAAAGCAGCTTGC 7886 |||||| || |||||||| |||||| | || || |||||| || | || || Sbjct 457871 GCGTCTCGCCAGTTTCAAGGATTGGCCGCGTTGCATGCGCCAAAAACCAGAGGAACTCGC 457930 Query 7887 CGAAGCTGGATTATACTACACGGGCCGCGGTGATATGACAAAGTGTTTCTACTGTGACGG 7946 ||||| ||||| | |||||| |||| || |||| || || |||||||| || || || Sbjct 457931 GGAAGCAGGATTTTTCTACACCGGCCAAGGGGATAAAACGAAATGTTTCTATTGCGATGG 457990 Query 7947 GGGTCTCAAAGATTGGGAGGAAAACGATATACCGTGGGAGCAACACGCGCGCTGGTTTGA 8006 ||||||||||||||||| | ||||| | || ||||| || || || || ||||| || Sbjct 457991 AGGTCTCAAAGATTGGGAAAACGACGATGTTCCATGGGAACAGCATGCCCGTTGGTTCGA 458050 Query 8007 TAAATGCGCATATGTCAAACTAGTCAAAGGGGAGGAATATGTTCAGAAGGTAATTACTGA 8066 | || || ||||| |||| || ||||| || ||||| |||| |||| | | || Sbjct 458051 TCGTTGTGCGTATGTGCAACTTGTTAAAGGCCGTGATTATGTCCAGAGGGTATTATCGGA 458110 Query 8067 AGCGTG 8072 |||||| Sbjct 458111 AGCGTG 458116 >seq36 Length=1647457 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| || |||||||| ||||||||||| || | || | || || Sbjct 455810 ACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCCTCG 455751 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || ||||| || |||| |||||| || || | ||||| |||||||||||| Sbjct 455750 AGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 455691 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| |||||| | | || || || | ||||| |||| ||||| |||||| Sbjct 455690 ATCTTAGCCTTTACATTCTCAATAGTGTCAGATGGTTCCACTTCCAGTGTAATAGTTTTT 455631 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | |||||| || || |||||||| Sbjct 455630 CCAGTGAGAGTTTTAACGAAGATCTGCAT 455602 Score = 107 bits (118), Expect = 1e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || || ||| || || || || ||||| || || | || Sbjct 455135 AGACGGAGCACCAGGTGAAGAGTTGACTCCTTCTGGATGTTATAATCTGAGAGGGTGCGG 455076 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || || ||||| || ||||| ||||||||||| ||||| | ||||| || ||| Sbjct 455075 CCGTCTTCTAATTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGAATACCTTCC 455016 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || ||| || | | || ||||||| ||| || || | || Sbjct 455015 TTATCTTGAATTTTAGCTTTGACGTTCTCAATAGTGTCTGACGGCTCAACTTCGAGAGTG 454956 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || ||||| |||||||| |||||||||||| Sbjct 454955 ATGGTTTTACCAGTCAAGGTTTTTACGAAAATCTGCATC 454917 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| || |||||||| ||||||||||| || | || | || || Sbjct 455582 ACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCCTCA 455523 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| || |||||||| |||| |||||| || || | ||||| ||| || ||||| Sbjct 455522 AGCTGTTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGG 455463 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || ||| | | || ||||| | ||| ||||| | || || ||||| Sbjct 455462 ATCTTTGCCTTAACATTCTCGATAGTGTCTGAAGGCTCAACCTCAAGGGTGATGGTTTTA 455403 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||| ||||| |||||||| Sbjct 455402 CCTGTGAGGGTTTTGACAAAGATCTGCAT 455374 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| |||||||| || || ||| | || |||| || | ||||||||||||||| Sbjct 935572 TCCTTTTGGATATTGTAGTCGGAGAGAGTACGGCCGTCCTCGAGCTGCTTACCGGCAAAG 935631 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || |||||||| ||||||| |||| ||| |||||||| ||| || || ||| Sbjct 935632 ATAAGTCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATTTTGGCCTTAACATTC 935691 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | |||||| || | || |||||||| || |||| || || || Sbjct 935692 TCAATTGTGTCAGAAGGCTCCACTTCAAGTGTGATCGTTTTACCGGTCAGCGTCTTAACG 935751 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 935752 AATATTTGCAT 935762 >seq158 Length=707457 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| | |||||| || || ||| ||||| || |||||||||||||| Sbjct 607303 CCTCCTCTAAGCCTAAGCACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGAC 607244 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || ||||||||||| ||||| || || ||||||||||| |||| || Sbjct 607243 AGAGTACGGCCATCTTCCAACTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCCGGAGGG 607184 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || || || ||||| || ||| | | | ||||| ||||||||| Sbjct 607183 ATACCTTCTTTATCTTGGATCTTAGCCTTCACATTTTCGATGGTGTCTGAAGCCTCCACC 607124 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || | || || || || ||||| | ||||| || || |||||||| || Sbjct 607123 TCAAGGGTGATGGTCTTCCCCGTTAGGGTTTTGACGAATATCTGCATTGT 607074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380840702688333