Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq36 149 1e-30 seq158 100 5e-16 seq175 87.8 3e-12 >seq36 Length=1647457 Score = 149 bits (164), Expect = 1e-30 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || || |||| || | ||| | || || ||| || Sbjct 937509 AATTTGCATACCACCGCGGAGGCGGAGCACCAAGTGAAGTGTGGATTCCTTCTGAATGTT 937568 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| |||| || | ||| ||||| || |||||||||||||| | | ||| || Sbjct 937569 GTAGTCTGATAGAGTGCGCCCATCTTCTAACTGCTTTCCGGCAAAAATGAGACGCTGCTG 937628 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || |||||||| ||||| ||||||| || | |||| |||||| || || Sbjct 937629 ATCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCACATTTTCAATAGTGTCTGA 937688 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||||||| | ||| |||||||| || |||| || ||||| || || |||||||| Sbjct 937689 AGGCTCAACTTCCAAAGTGATAGTTTTCCCAGTTAAAGTCTTTACGAAGATCTGCATTTT 937748 Score = 120 bits (132), Expect = 5e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193145 TCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGA 193204 ||| ||||| | |||||| |||| || || ||||| |||||||| | || | Sbjct 935547 TCGTAGTACTAAATGCAAAGTAGATTCCTTTTGGATATTGTAGTCGGAGAGAGTACGGCC 935606 Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 || || | || || |||||||| || | || ||| ||||| ||||| || ||||| || Sbjct 935607 GTCCTCGAGCTGCTTACCGGCAAAGATAAGTCGCTGCTGATCCGGAGGAATGCCTTCCTT 935666 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || ||||||| || | ||| ||| || || |||| ||| ||||| || || || Sbjct 935667 GTCCTGAATTTTGGCCTTAACATTCTCAATTGTGTCAGAAGGCTCCACTTCAAGTGTGAT 935726 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || ||||| || || ||||||||||| Sbjct 935727 CGTTTTACCGGTCAGCGTCTTAACGAATATTTGCAT 935762 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || |||||||||| |||| || | || || ||| || || || Sbjct 455603 ATACCACCACGCAGACGAAGTACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCA 455544 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | ||||| |||||||| || |||| ||| || || || Sbjct 455543 GAAAGGGTGCGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGG 455484 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| || || | || | ||| ||||| || |||| |||| Sbjct 455483 GGAATGCCTTCTTTGTCTTGGATCTTTGCCTTAACATTCTCGATAGTGTCTGAAGGCTCA 455424 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||||||||| || ||||| ||||| || ||||| Sbjct 455423 ACCTCAAGGGTGATGGTTTTACCTGTGAGGGTTTTGACAAAGATCTGCAT 455374 Score = 113 bits (124), Expect = 8e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | || ||||| | ||||| || | |||||| ||| || Sbjct 937281 AATTTGCATTCCACCGCGGAGTCTGAGTACTAAATGCAGAGTGGACTCTTTCTGAATGTT 937340 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || | || | || || | |||||||||||||| || | || ||| || Sbjct 937341 GTAATCTGACAGAGTGCGGCCGTCCTCAAGCTGTTTTCCGGCAAAGATAAGTCGCTGCTG 937400 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || ||||| ||||| || ||||| | ||| | ||| ||| || || || Sbjct 937401 ATCTGGAGGAATGCCTTCCTTATCCTGGATTTTAGCTTTAACATTCTCAATTGTGTCCGA 937460 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| || || || ||||| || || ||||| || ||||| |||||||| Sbjct 937461 TGGTTCCACTTCCAGTGTGATTGTTTTGCCAGTCAGCGTCTTGACAAAAATTTGCAT 937517 >seq158 Length=707457 Score = 100 bits (110), Expect = 5e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193129 ATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGT 193188 || |||| ||||| | | ||| |||| || | || | ||||| ||||| || | Sbjct 607308 ATTTACCTCCTCTAAGCCTAAGCACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAAT 607249 Query 193189 CGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAG 193248 | || | || | ||| || || || || ||||| || || | || |||||| || | Sbjct 607248 CAGACAGAGTACGGCCATCTTCCAACTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCCG 607189 Query 193249 GAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACT 193308 |||| || |||||||||||||| || || | || | |||| || || || |||| || Sbjct 607188 GAGGGATACCTTCTTTATCTTGGATCTTAGCCTTCACATTTTCGATGGTGTCTGAAGCCT 607129 Query 193309 CAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || || || || || || || || ||||| ||||| || ||||| |||||| Sbjct 607128 CCACCTCAAGGGTGATGGTCTTCCCCGTTAGGGTTTTGACGAATATCTGCATT 607076 >seq175 Length=629782 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 193236 CTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATA 193295 ||||| ||||||||||| ||||| || |||||||| || |||| ||| | ||| ||| Sbjct 293532 CTCTGCTGATCAGGAGGGATTCCCTCCTTATCTTGAATCTTGGCTTTCACATTCTCGATA 293591 Query 193296 GTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATT 193355 || || || | ||| || || ||||| || || || || ||||| || || || || || Sbjct 293592 GTGTCCGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTCTTAACGAAGATC 293651 Query 193356 TGCATTTT 193363 ||||| || Sbjct 293652 TGCATCTT 293659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899419691412720