Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq36 114 2e-20 seq158 98.7 1e-15 >seq36 Length=1647457 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | || || || ||||| |||||||| || || ||||| || | Sbjct 937748 AAAATGCAGATCTTCGTAAAGACTTTAACTGGGAAAACTATCACTTTGGAAGTTGAGCCT 937689 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | |||| ||| ||||| ||||| ||||| ||||||||||| |||||||| Sbjct 937688 TCAGACACTATTGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGAT 937629 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || | | |||| |||||| |||||| | |||||| | ||| ||||||| || Sbjct 937628 CAGCAGCGTCTCATTTTTGCCGGAAAGCAGTTAGAAGATGGGCGCACTCTATCAGACTAC 937569 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || || || | || ||||| || ||| Sbjct 937568 AACATTCAGAAGGAATCCACACTTCACTTGGTG 937536 Score = 105 bits (116), Expect = 1e-17 Identities = 138/190 (73%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| | |||||||||||||||||| | ||||| ||| ||| Sbjct 455602 ATGCAGATCTTCGTTAAAACTCTCACTGGAAAAACTATTACACTGGAAGTGGAACCATCT 455661 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || ||| || ||||| || || ||||| || ||||| || Sbjct 455662 GACACTATTGAGAATGTAAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAG 455721 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||||| || |||||||| ||| | | || | || ||||| || Sbjct 455722 CAGCGATTGATCTTCGCCGGCAAACAGCTCGAGGATGGCCGCACCCTTTCTGATTACAAC 455781 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 455782 AT-TCAAAAG 455790 Score = 100 bits (110), Expect = 4e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 155818 ATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAG 155877 |||| ||||| || || | ||||| |||||||| ||||| || || | ||||| || Sbjct 454913 ATAAGATGCAGATTTTCGTAAAAACCTTGACTGGTAAAACCATCACTCTCGAAGTTGAGC 454972 Query 155878 ATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAG 155937 || || | |||| ||||| ||| |||||| |||||||| ||||| || || |||| Sbjct 454973 CGTCAGACACTATTGAGAACGTCAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAG 455032 Query 155938 AACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATT 155997 | || || || |||| | ||| || ||||| | ||||| | | || | ||||||| Sbjct 455033 ATCAGCAGCGACTGATCTTTGCTGGAAAGCAATTAGAAGACGGCCGCACCCTCTCAGATT 455092 Query 155998 ATAATATATCCAAAGAGGCGACGCTTCA 156025 |||| || || ||| | || ||||| Sbjct 455093 ATAACATCCAGAAGGAGTCAACTCTTCA 455120 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| |||| || |||| || ||||| || ||| | ||||| || |||| Sbjct 935762 ATGCAAATATTCGTTAAGACGCTGACCGGTAAAACGATCACACTTGAAGTGGAGCCTTCT 935703 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||||| || || || |||||||| ||||| || || Sbjct 935702 GACACAATTGAGAATGTTAAGGCCAAAATTCAGGACAAGGAAGGCATTCCTCCGGATCAG 935643 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | |||||||||||||||||| || | | ||| | || || || | Sbjct 935642 CAGCGACTTATCTTTGCCGGTAAGCAGCTCGAGGACGGCCGTACTCTCTCCGACTACA-- 935585 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||||||||| || | || | |||||||| || || | | ||||| Sbjct 935584 ATATCCAAAAGGAATCTACTTTGCATTTAGTACTACGACTTCGCGGCGG 935536 Score = 89.7 bits (98), Expect = 8e-13 Identities = 142/203 (70%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| | ||||||||||| |||||| | ||||| ||| ||| Sbjct 455830 ATGCAGATCTTCGTTAAAACTCTCACTGGAAAAACAATTACACTGGAAGTGGAACCATCT 455889 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | | || || || || || ||||| ||||||||||| || ||||| || Sbjct 455890 GACACTGAG---AATGTAAAGGCAAAGATCCAAGACAAAGAAGGCATTCCCCCAGACCAG 455946 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||||| || ||||| || ||| | | || | ||||| || || Sbjct 455947 CAGCGATTGATCTTCGCCGGCAAACAGCTTGAGGATGGCCGCACCCTTTCAGACTACAAC 456006 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 456007 ATCCAGAAAGAGTCAACTCTTCA 456029 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | ||||| ||||||||||| | ||||| || |||| Sbjct 456055 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAAACTATTACTCTTGAAGTTGAGCCTTCT 456114 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || ||||| ||||||||||| || ||||| || Sbjct 456115 GACACCATTGAGAATGTAAAGGCAAAGATCCAAGACAAAGAAGGCATTCCCCCAGACCAG 456174 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || ||||||| | || || || |||||||| ||| Sbjct 456175 CAGCGATTGATCTTCGCTGGCAAACAGCTCGAGGAT 456210 >seq158 Length=707457 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| ||||| | ||||| | || || || || || || | || || || | ||| Sbjct 607076 AATGCAGATATTCGTCAAAACCCTAACGGGGAAGACCATCACCCTTGAGGTGGAGGCTTC 607135 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||| ||||| ||| || |||||||||||||| || ||||| || || Sbjct 607136 AGACACCATCGAAAATGTGAAGGCTAAGATCCAAGATAAAGAAGGTATCCCTCCGGACCA 607195 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || | || | ||||| |||||| | |||||| | | ||| | || ||||| || Sbjct 607196 ACAGCGACTCATCTTCGCCGGCAAGCAGTTGGAAGATGGCCGTACTCTGTCTGATTACAA 607255 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| ||||| | || ||||| || ||| | || | ||||| ||| Sbjct 607256 TATCCAGAAAGAATCCACTCTTCACTTGGTGCTTAGGCTTAGAGGAGGT 607304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731681063743600