Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq44 228 7e-55 seq509 159 3e-34 seq36 104 2e-17 >seq44 Length=1464967 Score = 228 bits (252), Expect = 7e-55 Identities = 498/732 (68%), Gaps = 19/732 (3%) Strand=Plus/Plus Query 28585 AACAAGTCTGGAAAGGCGAAGCCGTCGCTAAAAAGGCCACGATCGACGTGTATAAAAGCG 28644 || ||||||||||||| | | | |||| || ||||| || | ||| | || ||| Sbjct 1426179 AAGAAGTCTGGAAAGGTGCTGGCAGCGCTTCAATGGCCAACTTCAAAGTGAAGAAGGGCG 1426238 Query 28645 GACACTTTAGCATGCGCGTTAAATTGTGCGATGAGGATGGCTGCTCTGTGAGCGAATCGG 28704 ||| || | |||| ||| | |||||| | ||||| ||| |||||| |||| Sbjct 1426239 GACGCTATCAGATGCAAGTTGAGTTGTGCAACTCCGATGGATGCAGCTCGAGCGAGTCGG 1426298 Query 28705 TAATTGTCAAAGTTGCAGATACGGACGGTGGGCATTTGTCTCCGCTGGAGT--ACGTTTG 28762 | || || || || || |||||| | || || | || || || | || | | Sbjct 1426299 TGGAGATCGTTGTGGCTGACACCGACGGTAGCCACTTACCGCCTCTAGAATTCACCATCG 1426358 Query 28763 GCGGGAA-AATAA-CAAACCTGGCCGACGCCAGGACAAGACCGTCGCTGCGTATTTTGTG 28820 | | ||| ||||| | | | || ||| | || ||| |||| |||||| || || Sbjct 1426359 GAGAGAAGAATAAGCCATTCAAGCAGACCTCTGGTAAAGTT-GTCGGTGCGTACTTCGTA 1426417 Query 28821 GAATGGAGCGTGTACGGCCGCAACTTTTCGGTGGACAAGGTGCCGCTGCCCAACCTCTCG 28880 |||||| |||||||| || || || | || ||||| || || | |||||||| | Sbjct 1426418 GAATGGGGCGTGTACCCGCGAAAGTTCCCCGTAGACAAAGTTCCCGTTCCCAACCTGACC 1426477 Query 28881 CATCTGTTATACGGCTTCGTACCTATTTGCGGCGGCGACGGGCTCAACGACGCCCTTAAA 28940 || | || ||||||||| | || ||||||||||| || || | |||||| | || Sbjct 1426478 CACTTATTGTACGGCTTCATCCCGATTTGCGGCGGTGATGGCATTAACGACAGTTTGAAG 1426537 Query 28941 ACCATACCCGGTAGTTTTGAAGCGCTGCAACGTTCGTGCAACGGCCGTTCAGATTTTAAA 29000 || |||||||| |||| |||||||| || |||| ||| || ||| || ||| Sbjct 1426538 GAAATTGAGGGTAGTTTCCAAGCACTGCAACGCTCCTGCAGCGGTCGGGAAGACTTCAAA 1426597 Query 29001 GTTGCTATTCACGATCCTTGGGCCGCAATACAAAAACCGCAAAAGGGCGTGTCTGCGTGG 29060 || | || |||||||||||||| || | ||||| || || |||||| | || | ||| Sbjct 1426598 GTATCCATCCACGATCCTTGGGCTGCTTTGCAAAAGCCACAGAAGGGCTTATCGTCCTGG 1426657 Query 29061 AACGAGCCCTACAAAGGCAATTTCGGTCAGCTCATG--GCTGCCAAGTTGGCCAATCCAC 29118 || ||||| ||||| |||||||||||||| || ||| | || || |||||| || Sbjct 1426658 AATGAGCCTTACAAGGGCAATTTCGGTCAACTGATGATGTTG--AAACAGGCCAAACCTG 1426715 Query 29119 ACATCAAAATTCTACCGTCCATAGGCGGCTGGACATTGTCCGA-CCCTTTTTATTTT--- 29174 || | || ||||| || || | || || ||||| || | || ||||| || || | Sbjct 1426716 ACCTGAAGATTCTTCCTTCAGTCGGTGGTTGGACCCTGGCTGATCCCTTCTTCTTCTTCG 1426775 Query 29175 ATGCACGACGCGGAGAAACGGCGCGTGTTTGTGGACTCGGTCGAGGAATTTTTGCAGGTG 29234 ||| || | | ||| | ||| || || | || ||| |||| ||||| ||| Sbjct 1426776 ATG-ACAAAGTTAAGAGAGACCGC---TTCGTTGGTTCAGTCAAGGACTTTTTACAGACC 1426831 Query 29235 TGGAAATTTTTTGACGGCGTAGACATTGACTGGGAATTTCCGGGCGGTAAAGGCGCTAAC 29294 |||||||| || || ||||| || ||||| ||||| || || || ||||| || |||||| Sbjct 1426832 TGGAAATTCTTCGATGGCGTTGATATTGATTGGGAGTTCCCTGGAGGTAAGGGAGCTAAC 1426891 Query 29295 CC-GACACTTGG 29305 || ||| ||||| Sbjct 1426892 CCTGAC-CTTGG 1426902 >seq509 Length=156790 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34487 AAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGA 34546 || |||| || | || ||||||||||| | ||| ||||||||||||||| ||||||| Sbjct 47861 AAGTGGCTGGCCTGCCGAGCGCCTTGGCCACTTCCACCATGTTGACGATGACGGTCTTGA 47920 Query 34547 TGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACG 34606 |||||||||| || || || ||||| ||||| || |||||||| ||||| |||||||||| Sbjct 47921 TGCCGTTGCCTTTGCCCTCCACCTTAGCGCATATCCGCGGCATCTTGTACCGGTAGAACG 47980 Query 34607 CGTCCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 |||||| ||| || | ||| |||||||| | ||||||| || Sbjct 47981 CGTCCGACACGTTCCTGTTCACGTTCACCGACCCCATCTTG 48021 Score = 152 bits (168), Expect = 4e-32 Identities = 153/199 (77%), Gaps = 15/199 (8%) Strand=Plus/Plus Query 33584 CGGCCACTTTGGGCAGCAGCG---CCTGGTCCAAAACGCAcagcgcggtgagcgcggcc- 33639 ||| ||| ||||||||||||| | |||| | |||| ||||||||||||||| | Sbjct 44659 CGGGCACCTTGGGCAGCAGCGTGGCGTGGTGCC---CGCAGAGCGCGGTGAGCGCGTGCA 44715 Query 33640 --------cgctgcgcgcgcagatcgccgcgcgtaaactgcagcagcagcgcgcggtact 33691 |||||||||||| |||||||| || || |||||||||||||||||| Sbjct 44716 GGGCGCTGCGCTGCGCGCGCGAGTCGCCGCGGGTGAAGCGCAGCAGCAGCGCGCGGTGGC 44775 Query 33692 tgcgcACGTCCCCGGCGAACGCCGCCGGCCTCACCAGCACCTCGAACAGCACCAGCGGCG 33751 |||||||| || || | ||||| | | ||||||||||||||| | ||||||||||| Sbjct 44776 GCCGCACGTCGCCCGCCAGCGCCGACCCGCGCACCAGCACCTCGAATATCACCAGCGGCG 44835 Query 33752 CCTTCGACTTCACCTCCAG 33770 ||||||||||||||||||| Sbjct 44836 CCTTCGACTTCACCTCCAG 44854 Score = 149 bits (164), Expect = 5e-31 Identities = 133/167 (80%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 34201 GCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGA 34260 || |||||||| |||||||||||||||||||| || || ||||| ||| |||||| Sbjct 46639 GCGGGCGGGTTCTTCAGTATGAAGGTGTTGAGTTTGTGGTTGAAGTCGAGCTGGCCGTGG 46698 Query 34261 TAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCA 34320 || ||||| || ||||||||||| | ||| ||||| || | |||||| || ||||| Sbjct 46699 TACCCGCAAGCCTTGCAGCCCTGCGAAATAGTGTTCCGCTTGGTGGACACAATCAGCTCC 46758 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAA 34367 ||||| ||||| || || ||||| |||| ||| |||||||||||||| Sbjct 46759 GTCTCGGGGTTATCGCACTCCGGGCACAGCACGAACTTGCGGATGAA 46805 Score = 123 bits (136), Expect = 2e-23 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428 || || ||||||||||| | ||| | ||||||||| ||||||||||||||| || ||| Sbjct 47166 CCGTCCAGCAGGTCCTGCAGCTTGGCCGAGTCGTGGCTGCCGTTGACGATGAACCGCTCG 47225 Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT 34486 || ||| | |||| |||||| || ||||| |||||||| ||||||||||| ||||||| Sbjct 47226 TTCTTGAAGTCGAACTGCGTCTGAGCGCCGAGCTCGCAGCCGAAGTACTTCGTCGGGT 47283 Score = 98.7 bits (108), Expect = 8e-16 Identities = 132/179 (74%), Gaps = 11/179 (6%) Strand=Plus/Plus Query 33400 TCGAGCTCCTCAGCGCTGTCGCTGCTGTCCTCGGCCTGCTGCAGCCAGTCCAGGAAGGGC 33459 ||| | || ||| |||||||| | || ||||||||| |||||||||||| ||||| ||| Sbjct 44240 TCGTGGTCGTCATCGCTGTCG-TCCT--CCTCGGCCTCCTGCAGCCAGTCGAGGAACGGC 44296 Query 33460 TGCGCGCGGCGCCGCACGTCCGCCATCTCCTCGCGGCTTAG-CGC---TTTGCGGGACGG 33515 |||||||| || || ||||| |||| | | || ||| | ||| ||| || || || Sbjct 44297 TGCGCGCGCCGGCGTACGTCTGCCACCACTTC----CTTCGACGCGAATTTACGTGAAGG 44352 Query 33516 CTTGTAAAACCACTCCACGATCGCTTTCTTTTCCACCACGTTCAAGTCGTACAGCAGCT 33574 ||| ||| |||| |||||| || | |||||| | || | ||||||||||| || Sbjct 44353 CTTCGCGGCCCATTCCAGGATCGCCTTTTCTTCCACAATGTCCTCGTCGTACAGCAACT 44411 >seq36 Length=1647457 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||||||||| | || || |||||||| ||| | || |||||| Sbjct 455374 ATGCAGATCTTTGTCAAAACCCTCACAGGTAAAACCATCACCCTTGAGGTTGAGCCTTCA 455433 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | || || ||||| |||||||||||| | ||| || || Sbjct 455434 GACACTATCGAGAATGTTAAGGCAAAGATCCAAGACAAAGAAGGCATTCCCCCAGACCAG 455493 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| || |||||||| ||||||| | | || | | ||||||||| Sbjct 455494 CAGCGATTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCCTTTCTGATTACAAC 455553 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || ||||| |||| | | ||||| || || Sbjct 455554 ATTCAAAAGGAATCCACCCTGCACTTGGTACTTCGTCTGCGTGGTGG 455600 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||||||||| || || || | ||||| ||||| || || | ||| ||||||| Sbjct 935762 ATGCAAATATTCGTTAAGACGCTGACCGGTAAAACGATCACACTTGAAGTGGAGCCTTCT 935703 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || || ||| ||||| |||||| | || |||||| Sbjct 935702 GACACAATTGAGAATGTTAAGGCCAAAATTCAGGACAAGGAAGGCATTCCTCCGGATCAG 935643 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||||| | ||| ||||| ||||| ||||| | | | || | | || ||||| Sbjct 935642 CAGCGACTTATCTTTGCCGGTAAGCAGCTCGAGGACGGCCGTACTCTCTCCGACTACAAT 935583 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| |||||||| ||||| | || || |||| || || || Sbjct 935582 ATCCAAAAGGAATCTACTTTGCATTTAGTACTACGACTTCGCGGCGG 935536 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | || |||||||| || || | ||| ||| || Sbjct 937517 ATGCAAATTTTTGTCAAGACGCTGACTGGCAAAACAATCACACTGGAAGTGGAACCATCG 937458 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| || || || || |||||| | || ||||| Sbjct 937457 GACACAATTGAGAATGTTAAAGCTAAAATCCAGGATAAGGAAGGCATTCCTCCAGATCAG 937398 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||||| | ||| || |||||||| ||||| | | | || || | ||||||||| Sbjct 937397 CAGCGACTTATCTTTGCCGGAAAACAGCTTGAGGACGGCCGCACTCTGTCAGATTACAAC 937338 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| ||||| || || |||| | || | ||||| || || |||| Sbjct 937337 ATTCAGAAAGAGTCCACTCTGCATTTAGTACTCAGACTCCGCGGTGGAA 937289 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || | || |||||||| ||||| | ||| |||||| Sbjct 456055 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAAACTATTACTCTTGAAGTTGAGCCTTCT 456114 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | ||||| ||||| |||||||||||| | ||| || || Sbjct 456115 GACACCATTGAGAATGTAAAGGCAAAGATCCAAGACAAAGAAGGCATTCCCCCAGACCAG 456174 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | || || |||||||| ||||||| | | || | | || |||||| Sbjct 456175 CAGCGATTGATCTTCGCTGGCAAACAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 456234 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 || || || || ||||| | ||| ||||| | | || || || ||||| Sbjct 456235 ATCCAGAAGGAGTCTACTCTTCACCTGGTGCTTCGTCTTCGCGGTGGAAA 456284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412736587417403