Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq44 214 1e-50 seq116 163 2e-35 seq36 98.7 8e-16 >seq44 Length=1464967 Score = 214 bits (236), Expect = 1e-50 Identities = 355/508 (70%), Gaps = 10/508 (2%) Strand=Plus/Plus Query 29067 GTCGCTGCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTG 29126 |||| |||||| || |||||||||||||| || || || || || ||||||||||| Sbjct 1426400 GTCGGTGCGTACTTCGTAGAATGGGGCGTGTACCCGCGAAAGTTCCCCGTAGACAAAGTT 1426459 Query 29127 CCGCTGCCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGG 29186 || | |||||||| | || | |||||||| ||||| || ||||||||||| || || Sbjct 1426460 CCCGTTCCCAACCTGACCCACTTATTGTACGGCTTCATCCCGATTTGCGGCGGTGATGGC 1426519 Query 29187 CTCAACGACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAG 29246 | |||||| | || ||| || ||||| | || ||||||||||| |||| Sbjct 1426520 ATTAACGACAGTTTGAAGGAAATTGAGGGTAGTTTCCAAGCACTGCAACGCTCCTGCAGC 1426579 Query 29247 GGCCGTTCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAA 29306 || || ||| |||||||| | || |||||||| ||||| || | ||||| || || Sbjct 1426580 GGTCGGGAAGACTTCAAAGTATCCATCCACGATCCTTGGGCTGCTTTGCAAAAGCCACAG 1426639 Query 29307 AAGGGCGTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCC 29366 |||||| | || | ||||| ||||| ||||| || || |||||||| || ||| | Sbjct 1426640 AAGGGCTTATCGTCCTGGAATGAGCCTTACAAGGGCAATTTCGGTCAACTGATGATGTTG 1426699 Query 29367 AAGCTGGCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGAC 29426 || | |||||| || |||| || ||||| || || |||| || ||||| || | || Sbjct 1426700 AAACAGGCCAAACCTGACCTGAAGATTCTTCCTTCAGTCGGTGGTTGGACCCTGGCTGAT 1426759 Query 29427 CCGTTCTATTTCATGCACGACGCGGAAA---AACGGCGTGTG-TTTGTGGACTCGGTCAG 29482 || |||| ||| | | ||| ||| || | | | || || | || |||| Sbjct 1426760 CCCTTCTTCTTCTTCGATGAC----AAAGTTAAGAGAGACCGCTTCGTTGGTTCAGTCAA 1426815 Query 29483 AGAATTTCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGG 29542 || ||| | ||| ||||| || || || ||||| || || || |||||||| || || Sbjct 1426816 GGACTTTTTACAGACCTGGAAATTCTTCGATGGCGTTGATATTGATTGGGAGTTCCCTGG 1426875 Query 29543 TGGCAAAGGCGCCAACCC-GACACTTGG 29569 || || || || ||||| ||| ||||| Sbjct 1426876 AGGTAAGGGAGCTAACCCTGAC-CTTGG 1426902 >seq116 Length=882076 Score = 163 bits (180), Expect = 2e-35 Identities = 365/542 (67%), Gaps = 21/542 (4%) Strand=Plus/Plus Query 103568 AACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAG 103627 || || |||| |||| | || ||||| || ||||| ||||| || || || ||||| || Sbjct 457602 AATGGTTTCTACTACCTTGGGCGCGGTGATGAAGTTCGCTGTGCATTCTGTAAAGTAGAA 457661 Query 103628 ATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAG 103687 |||||||| |||| ||| || |||||||| || ||||| | | |||||||| || Sbjct 457662 ATTATGCGATGGGCGGAAGGAGACGACCCTGCGAAAGATCACAAACGATGGGCGCCCCAA 457721 Query 103688 TGTCCGTTCCTGaaaaa-------aaCGG--CTGCTGGCGCGCTGCCCGCCGGCCTTGCG 103738 |||||||| | || ||||| || |||| || | | || | || Sbjct 457722 TGTCCGTTTTTACGTAATCTTTCGAACGGTACTAATGGCA-GCGGA--GAAGGTAGTTCG 457778 Query 103739 ATGGACGGGCAGGACGAGTGCGGCGTGAGCGCGCTGCCGTCCACCAACGCCTGCGTGCGC 103798 || || | |||||||| || || ||| || || | | ||||| |||| Sbjct 457779 ---GAAGGTCGCGACGAGTGTGG--TGCGCGAGCAGCGACGCGGGA--GCCTG--TGCGT 457829 Query 103799 ATGCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAACTTTTAAG 103858 |||||||| || | ||| || || | || | ||| || | | | ||| ||| Sbjct 457830 ATGCCCGGACCTGTGCATCCCCGCTATGCAACAGAGTTATCGCGTCTCGCCAGTTTCAAG 457889 Query 103859 GATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTACTAC 103918 |||||||| || | || || ||||| ||| | | || ||||| ||||| | |||| Sbjct 457890 GATTGGCCGCGTTGCATGCGCCAAAAACCAGAGGAACTCGCGGAAGCAGGATTTTTCTAC 457949 Query 103919 ACCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTGGGAG 103978 |||||||| | || || |||||||| ||||| ||||| || ||||| || |||||||| Sbjct 457950 ACCGGCCAAGGGGATAAAACGAAATGTTTCTATTGCGATGGAGGTCTCAAAGATTGGGAA 458009 Query 103979 CACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCATACGTGCTA 104038 |||| |||| || ||| |||| || || | || || ||||| || || |||| | Sbjct 458010 AACGACGATGTTCCATGGGAACAGCATGCCCGTTGGTTCGATCGTTGTGCGTATGTGCAA 458069 Query 104039 CTTGTCAAGGGCCACGATTATGTACAAAAGGTCGTGACCCAATCGTGTGTTGTTCGCGAC 104098 ||||| || |||| |||||||| || | ||| | | || |||||||| | || | | Sbjct 458070 CTTGTTAAAGGCCGTGATTATGTCCAGAGGGTATTATCGGAAGCGTGTGTTATACGTGCC 458129 Query 104099 AC 104100 || Sbjct 458130 AC 458131 >seq36 Length=1647457 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||||||||| | ||||| |||||||| ||| | || ||| || Sbjct 455374 ATGCAGATCTTTGTCAAAACCCTCACAGGTAAAACCATCACCCTTGAGGTTGAGCCTTCA 455433 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | || || |||||| || ||||||||| | ||| || ||| Sbjct 455434 GACACTATCGAGAATGTTAAGGCAAAGATCCAAGACAAAGAAGGCATTCCCCCAGACCAG 455493 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| || | || | ||| || |||||||| ||||| | | || | | || |||||| Sbjct 455494 CAGCGATTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCCTTTCTGATTACAAC 455553 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||| || || ||||| |||| Sbjct 455554 ATTCAAAAGGAATCCACCCTGCACTTGGT 455582 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || |||||||| ||||| | ||| ||| || Sbjct 456055 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAAACTATTACTCTTGAAGTTGAGCCTTCT 456114 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | ||||| |||||| || ||||||||| | ||| || ||| Sbjct 456115 GACACCATTGAGAATGTAAAGGCAAAGATCCAAGACAAAGAAGGCATTCCCCCAGACCAG 456174 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| || | || | || || |||||||| ||||| | | || | | ||||||||| Sbjct 456175 CAGCGATTGATCTTCGCTGGCAAACAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 456234 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAAT 107786 || || ||||||||||| | ||| ||||| | | | || || |||||| Sbjct 456235 ATCCAGAAGGAGTCTACTCTTCACCTGGTGCTTCGTCTTCGCGGTGGAAAT 456285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398775339578119